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List of works by Andrew P Rice

A scalable algorithm for structure identification of complex gene regulatory network from temporal expression data ⬇️

scientific article

Animal models of chemotherapy-induced peripheral neuropathy: A machine-assisted systematic review and meta-analysis

scientific article published on 20 May 2019

Assays for precise quantification of total (including short) and elongated HIV-1 transcripts.

scientific article

Cdk9 T‐loop phosphorylation is regulated by the calcium signaling pathway ⬇️

scientific article published on February 1, 2012

Challenges and strategies for the eradication of the HIV reservoir

scientific article

Characterization of Cdk9 T-loop phosphorylation in resting and activated CD4(+) T lymphocytes.

scientific article published on 10 September 2009

Construction and characterization of a potent HIV-2 Tat transdominant mutant protein.

scientific article published on July 1994

Crosstalk between histone modifications indicates that inhibition of arginine methyltransferase CARM1 activity reverses HIV latency.

scientific article published on 20 June 2017

Cyclin T1 and CDK9 T-loop phosphorylation are downregulated during establishment of HIV-1 latency in primary resting memory CD4+ T cells.

scientific article published on 14 November 2012

Cyclin T1 but not cyclin T2a is induced by a post-transcriptional mechanism in PAMP-activated monocyte-derived macrophages

scientific article published on 05 December 2005

Cyclin T1-dependent genes in activated CD4 T and macrophage cell lines appear enriched in HIV-1 co-factors

scientific article

Cyclin-dependent kinases as therapeutic targets for HIV-1 infection.

scientific article published on 31 October 2016

Dysregulation of positive transcription elongation factor B and myocardial hypertrophy.

scientific article published on June 2009

Emerging theme: cellular PDZ proteins as common targets of pathogenic viruses

scientific article published on 20 July 2011

Epstein-Barr virus BART9 miRNA modulates LMP1 levels and affects growth rate of nasal NK T cell lymphomas

scientific article

Exon2 of HIV-2 Tat contributes to transactivation of the HIV-2 LTR by increasing binding affinity to HIV-2 TAR RNA.

scientific article

Functional significance of the dinucleotide bulge in stem-loop1 and stem-loop2 of HIV-2 TAR RNA

scientific article published on 01 July 1994

HIV-1 Tat protein is able to efficiently transactivate the HIV-2 LTR through a TAR RNA element lacking both dinucleotide bulge binding sites

scientific article published on 01 January 1995

Human immunodeficiency virus type 1 infection induces cyclin T1 expression in macrophages.

scientific article published on August 2004

Identification of LKLF-regulated genes in quiescent CD4+ T lymphocytes.

scientific article

Identification of a 90-kDa polypeptide which associates with adenovirus VA RNAI and is phosphorylated by the double-stranded RNA-dependent protein kinase.

scientific article published in December 1989

Identification of novel CDK9 and Cyclin T1-associated protein complexes (CCAPs) whose siRNA depletion enhances HIV-1 Tat function

scientific article published on 30 October 2012

Increased association of 7SK snRNA with Tat cofactor P-TEFb following activation of peripheral blood lymphocytes

scientific article published on 01 November 2003

Induction of TAK (Cyclin T1/P-TEFb) in Purified Resting CD4 + T Lymphocytes by Combination of Cytokines ⬇️

scientific article published on December 1, 2001

Induction of the HIV-1 Tat co-factor cyclin T1 during monocyte differentiation is required for the regulated expression of a large portion of cellular mRNAs.

scientific article published on 09 June 2006

Inhibition of HIV-1 by a double transdominant fusion gene.

scientific article

Integration of human immunodeficiency virus type 1 in untreated infection occurs preferentially within genes

scientific article

Interleukin-10 inhibits HIV-1 LTR-directed gene expression in human macrophages through the induction of cyclin T1 proteolysis

scientific article published on 15 June 2006

Isolation and characterization of the human DC-SIGN and DC-SIGNR promoters.

scientific article published in August 2003

Latently-infected CD4+ T cells are enriched for HIV-1 Tat variants with impaired transactivation activity

scientific article published on 5 March 2009

Limited proteolytic digestions identify common structural features of HIV-1 Tat proteins expressed during infection from alternatively spliced mRNAs.

scientific article

Limited redundancy in genes regulated by Cyclin T2 and Cyclin T1.

scientific article

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error

article

Making a Short Story Long: Regulation of P-TEFb and HIV-1 Transcriptional Elongation in CD4+ T Lymphocytes and Macrophages.

scientific article published on 15 June 2012

MicroRNA-mediated restriction of HIV-1 in resting CD4+ T cells and monocytes.

scientific article

Mini ways to stop a virus: microRNAs and HIV-1 replication

scientific article

Mining the human complexome database identifies RBM14 as an XPO1-associated protein involved in HIV-1 Rev function.

scientific article

Mutational analysis of the amino and carboxy termini of the HIV-2 Tat protein.

scientific article

Phosphatase PPM1A negatively regulates P-TEFb function in resting CD4+ T cells and inhibits HIV-1 gene expression ⬇️

scientific article published on June 22, 2012

Phosphatase PPM1A regulates phosphorylation of Thr-186 in the Cdk9 T-loop

scientific article

Proteomic Profiling of a Primary CD4+ T Cell Model of HIV-1 Latency Identifies Proteins Whose Differential Expression Correlates with Reactivation of Latent HIV-1.

scientific article published on 30 October 2017

RNAs Selected in vitro by the HIV-2 Tat Protein

scientific article published on 01 January 1997

Reactivation of latent HIV: do all roads go through P-TEFb?

scientific article published on July 2013

Regulation of TAK/P-TEFb in CD4+ T lymphocytes and macrophages

scientific article

Regulation of cyclin T1 and HIV-1 Replication by microRNAs in resting CD4+ T lymphocytes.

scientific article published on 28 December 2011

Regulation of interferon-β by MAGI-1 and its interaction with influenza A virus NS1 protein with ESEV PBM

scientific article

Risk of bias reporting in the recent animal focal cerebral ischaemia literature

scientific article

Roles of microRNAs and long-noncoding RNAs in human immunodeficiency virus replication

scientific article

Short Communication: The Broad-Spectrum Histone Deacetylase Inhibitors Vorinostat and Panobinostat Activate Latent HIV in CD4(+) T Cells In Part Through Phosphorylation of the T-Loop of the CDK9 Subunit of P-TEFb.

scientific article published on 5 January 2016

Short communication: SAHA (vorinostat) induces CDK9 Thr-186 (T-loop) phosphorylation in resting CD4+ T cells: implications for reactivation of latent HIV.

scientific article published on January 2015

Specific interaction of the human immunodeficiency virus Tat proteins with a cellular protein kinase.

scientific article published in December 1993

Subversion of Cell Cycle Regulatory Mechanisms by HIV.

scientific article published on June 2015

T-loop phosphorylated Cdk9 localizes to nuclear speckle domains which may serve as sites of active P-TEFb function and exchange between the Brd4 and 7SK/HEXIM1 regulatory complexes.

scientific article

TAK, an HIV Tat-associated kinase, is a member of the cyclin-dependent family of protein kinases and is induced by activation of peripheral blood lymphocytes and differentiation of promonocytic cell lines ⬇️

scientific article published on November 11, 1997

Targeting of CDK8 to a promoter-proximal RNA element demonstrates catalysis-dependent activation of gene expression.

scientific article published on August 1998

The Avian Influenza Virus NS1 ESEV PDZ Binding Motif Associates with Dlg1 and Scribble To Disrupt Cellular Tight Junctions ⬇️

scientific article published on August 17, 2011

The HIV-1 Tat protein: mechanism of action and target for HIV-1 cure strategies.

scientific article published on 4 July 2017

The HIV-1 Tat team gets bigger

scientific article published on 01 March 2010

The Influenza A Virus Protein NS1 Displays Structural Polymorphism

scientific article

The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein

scientific article

The use of text-mining and machine learning algorithms in systematic reviews: reducing workload in preclinical biomedical sciences and reducing human screening error

scholarly article published 31 January 2018

Transcriptional but not translational regulation of HIV-1 by the tat gene product.

scientific article

Transient induction of cyclin T1 during human macrophage differentiation regulates human immunodeficiency virus type 1 Tat transactivation function.

scientific article published on November 2002

Viral transactivators E1A and VP16 interact with a large complex that is associated with CTD kinase activity and contains CDK8

scientific article

Wild-type and mutant HIV-1 and HIV-2 Tat proteins expressed in Escherichia coli as fusions with glutathione S-transferase

scientific article published on 01 November 1994

Wild-type and transactivation-defective mutants of human immunodeficiency virus type 1 Tat protein bind human TATA-binding protein in vitro

scientific article

miR-132 enhances HIV-1 replication

scientific article published on 26 January 2013

miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1

scientific article

siRNA depletion of 7SK snRNA induces apoptosis but does not affect expression of the HIV-1 LTR or P-TEFb-dependent cellular genes

scientific article published on 01 December 2005

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