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List of works by Johannes Rainer

3D-cultivation of NSCLC cell lines induce gene expression alterations of key cancer-associated pathways and mimic in-vivo conditions

scientific article published on 6 November 2017

A Modular and Expandable Ecosystem for Metabolomics Data Annotation in R

scientific article published on 11 February 2022

An antibody microarray analysis of serum cytokines in neurodegenerative Parkinsonian syndromes

scientific article published on 23 November 2012

Automatic annotation in untargeted metabolomics: a proof of concept protocol based on recurrent experiments

Beclin 1 is dispensable for chromosome congression and proper outer kinetochore assembly.

scientific article published on 20 August 2015

C10ORF10/DEPP, a transcriptional target of FOXO3, regulates ROS-sensitivity in human neuroblastoma.

scientific article published on 28 September 2014

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis

scientific article

CLP1 links tRNA metabolism to progressive motor-neuron loss

scientific article published on 10 March 2013

Client-server environment for high-performance gene expression data analysis.

scientific article

Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees

scientific article published on 01 January 2019

Comprehensive proteomic and transcriptomic characterization of hepatic expression signatures affected in p14 liver conditional knockout mice.

scientific article

Computational assessment of feature combinations for pathogenic variant prediction.

scientific article published on 14 March 2016

ETV6/RUNX1-positive relapses evolve from an ancestral clone and frequently acquire deletions of genes implicated in glucocorticoid signaling

scientific article published on 11 January 2011

Elevated mRNA expression of CHAC1 splicing variants is associated with poor outcome for breast and ovarian cancer patients

scientific article published on 22 November 2011

Enhancing dopaminergic signaling and histone acetylation promotes long-term rescue of deficient fear extinction.

scientific article published on 06 December 2016

EpCAM overexpression prolongs proliferative capacity of primary human breast epithelial cells and supports hyperplastic growth.

scientific article published on 10 June 2013

Establishing a sensitive and specific assay for determination of glucocorticoid bioactivity

scientific article published on 07 April 2011

Expression, regulation and function of phosphofructo-kinase/fructose-biphosphatases (PFKFBs) in glucocorticoid-induced apoptosis of acute lymphoblastic leukemia cells

scientific article

FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees.

scientific article

Feature-based molecular networking in the GNPS analysis environment

scientific article published on 24 August 2020

Functional analyses of Src-like adaptor (SLA), a glucocorticoid-regulated gene in acute lymphoblastic leukemia

scientific article

Glucocorticoid-induced alterations in mitochondrial membrane properties and respiration in childhood acute lymphoblastic leukemia

scientific article published on 13 January 2011

Glucocorticoid-induced apoptosis and glucocorticoid resistance in acute lymphoblastic leukemia.

scientific article

Glucocorticoid-induced apoptosis and glucocorticoid resistance: molecular mechanisms and clinical relevance.

scientific article published in July 2004

Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia.

scientific article

Human Macrophages Preferentially Infiltrate the Superficial Adipose Tissue.

scientific article

Identification of glucocorticoid-response genes in children with acute lymphoblastic leukemia

scientific article

Influence of collection tubes during quantitative targeted metabolomics studies in human blood samples

scientific article published in November 2018

Insights into global mechanisms and disease by gene expression profiling

scientific article published on January 2011

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

scientific article

LC-MS/MS data analysis with xcms

MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data

scientific article published on 09 September 2020

MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data

scientific article published on 30 April 2020

Orphan kinases turn eccentric: a new class of cyclin Y-activated, membrane-targeted CDKs

scientific article

Oxidant therapy improves adipogenic differentiation of adipose-derived stem cells in human wound healing

scientific article published on 10 May 2021

PLZF/ZBTB16, a glucocorticoid response gene in acute lymphoblastic leukemia, interferes with glucocorticoid-induced apoptosis

scientific article

Pre-analytic evaluation of volumetric absorptive microsampling and integration in a mass spectrometry-based metabolomics workflow

scientific article published on 17 August 2017

Putative Prostate Cancer Risk SNP in an Androgen Receptor-Binding Site of the Melanophilin Gene Illustrates Enrichment of Risk SNPs in Androgen Receptor Target Sites

scientific article

Quantitative proteomic analysis reveals maturation as a mechanism underlying glucocorticoid resistance in B lineage ALL and re-sensitization by JNK inhibition

scientific article published on 27 August 2015

Repression of the BH3-only molecule PMAIP1/Noxa impairs glucocorticoid sensitivity of acute lymphoblastic leukemia cells.

scientific article

Research resource: transcriptional response to glucocorticoids in childhood acute lymphoblastic leukemia

scientific article

Restricting calcium currents is required for correct fiber type specification in skeletal muscle.

scientific article published on 10 March 2016

SOCS2 correlates with malignancy and exerts growth-promoting effects in prostate cancer.

scientific article published on 30 January 2014

The AR/NCOA1 axis regulates prostate cancer migration by involvement of PRKD1.

scientific article published on 2 June 2016

The arrhythmogenic cardiomyopathy-specific coding and non-coding transcriptome in human cardiac stromal cells.

scientific article

The metaRbolomics Toolbox in Bioconductor and beyond

scientific article published on 23 September 2019

The synthetic glucocorticoids prednisolone and dexamethasone regulate the same genes in acute lymphoblastic leukemia cells

scientific article

Translational profiling in childhood acute lymphoblastic leukemia: no evidence for glucocorticoid regulation of mRNA translation.

scientific article

eIF3a is over-expressed in urinary bladder cancer and influences its phenotype independent of translation initiation

scientific article published on 29 July 2014

ensembldb: an R package to create and use Ensembl-based annotation resources

scientific article published on 01 September 2019

miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer.

scientific article published on 8 June 2015

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