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List of works by Jui-Hung Hung

A 135-mW Fully Integrated Data Processor for Next-Generation Sequencing.

scientific article published in December 2017

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

scientific article

A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters

scientific article (publication date: August 2014)

Ash2l interacts with Oct4-stemness circuitry to promote super-enhancer-driven pluripotency network

scientific article published on 01 November 2019

Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk.

scientific article

Correction: Dlk1-Dio3 locus-derived LncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity

scientific article published on 05 February 2020

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

scientific article

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

scientific article published on 08 November 2012

Dicer partner proteins tune the length of mature miRNAs in flies and mammals

scientific article published on 11 October 2012

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

scientific article

Gene set enrichment analysis: performance evaluation and usage guidelines.

scientific article

Hdac6 regulates Tip60-p400 function in stem cells.

scientific article published on 03 December 2013

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm

scientific article published on 3 July 2014

Identification of functional modules that correlate with phenotypic difference: the influence of network topology.

scientific article

Identifying Regions Enriched in a ChIP-seq Data Set (Peak Finding).

scientific article

Long-term, efficient inhibition of microRNA function in mice using rAAV vectors

scientific article

Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

scientific article published on December 2011

MicroRNA-regulated, systemically delivered rAAV9: a step closer to CNS-restricted transgene expression

scientific article

PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm

scientific article

Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.

scientific article published on November 2010

ProKware: integrated software for presenting protein structural properties in protein tertiary structures.

scientific article

Sequence Alignment and Homology Search with BLAST and ClustalW.

scientific article

Tailor: a computational framework for detecting non-templated tailing of small silencing RNAs

scientific article

Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins

scientific article

Target RNA-directed trimming and tailing of small silencing RNAs

scientific article

The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1.

scientific article published on 3 November 2011

Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila

scientific article published on 2 July 2015

Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer

scientific article

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

scientific article published on 21 May 2009

Visualizing Genomic Annotations with the UCSC Genome Browser

scientific article

dbPTM: an information repository of protein post-translational modification

scientific article

locus-derived LncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity

scientific article published on 12 October 2018

sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping.

scientific article published on 13 July 2016

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