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List of works by Rolf S. Kaas

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

scientific article published on 29 November 2017

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand

scientific article

Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015.

scientific article published on December 2015

Draft Genome Sequence of Acinetobacter johnsonii C6, an Environmental Isolate Engaging in Interspecific Metabolic Interactions

scientific article

Draft genome sequence of the yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460.

scientific article published on June 2012

Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

scientific article

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

scientific article

European freshwater VHSV genotype Ia isolates divide into two distinct subpopulations.

scientific article

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

scientific article

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica

scientific article published on 04 February 2014

Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark

scientific article published on May 2016

First detection of linezolid resistance due to the optrA gene in enterococci isolated from food products in Denmark.

scientific article published on 20 May 2017

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

scientific article published on 03 March 2020

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival

scientific article

Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?

scientific article

Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012

scientific article

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

scientific article

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

scientific article published on 08 March 2019

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

scientific article published on 6 July 2014

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

scientific article published on May 2016

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

scientific article

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

scientific article published on 26 February 2014

ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

scientific article published in 2022

Solving the problem of comparing whole bacterial genomes across different sequencing platforms

scientific article

Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns

scientific article published on 06 October 2021

The CGE Tool Box

The COMPARE Data Hubs

scientific article published on 01 January 2019

The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010.

scientific article

Veillonella, Firmicutes: Microbes disguised as Gram negatives

scientific article

Worldwide human mitochondrial haplogroup distribution from urban sewage

scientific article published on 12 August 2019

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data

scientific article

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