List of works - Keiichi Mochida

<i>KARRIKIN UPREGULATED F-BOX 1</i> negatively regulates drought tolerance in Arabidopsis

scientific article published in 2022

A Novel Mouse Model of iNKT Cell-deficiency Generated by CRISPR/Cas9 Reveals a Pathogenic Role of iNKT Cells in Metabolic Disease

scientific article published on 6 October 2017

A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis

scientific article published on 13 March 2009

A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond.

scientific article published on 10 March 2010

Advances in omics and bioinformatics tools for systems analyses of plant functions

scientific article published on December 2011

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.

scientific article

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

scientific article

BdWRKY38 is required for the incompatible interaction of Brachypodium distachyon with the necrotrophic fungus Rhizoctonia solani

scientific article published on 05 September 2020

Brachypodium as a model for the grasses: today and the future

scientific article published on 19 July 2011

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.

scientific article published on 02 May 2016

Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis

scientific article

Comparative transcriptome analysis of nodules of two Mesorhizobium-chickpea associations with differential symbiotic efficiency under phosphate deficiency.

scientific article published on 19 June 2017

Confocal analysis of chromosome behavior in wheat x maize zygotes.

scientific article published in February 2004

Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags

scientific article published on 01 August 2004

Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags

scientific article

Correlation exploration of metabolic and genomic diversity in rice

scientific article

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

scientific article

Crop improvement using life cycle datasets acquired under field conditions

scientific article

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.

scientific article published in July 2015

Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags ⬇️

scientific article published on 01 November 2003

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.

scientific article published on 28 November 2017

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume

scientific article published on 24 October 2016

Evaluation of Brachypodium distachyon L-Tyrosine Decarboxylase Using L-Tyrosine Over-Producing Saccharomyces cerevisiae

scientific article published on 21 May 2015

Exploring Genetic Diversity in Plants Using High-Throughput Sequencing Techniques.

scientific article published on August 2016

Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags

scientific article

Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

scientific article

Functional genomics of soybean for improvement of productivity in adverse conditions.

scientific article published on 27 June 2010

Gene Co-expression Network Analysis Suggests the Existence of Transcriptional Modules Containing a High Proportion of Transcriptionally Differentiated Homoeologs in Hexaploid Wheat

article

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon. ⬇️

scientific article published on 11 May 2019

Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat.

scientific article published on 22 June 2007

Genome-wide analysis for identification of salt-responsive genes in common wheat

scientific article published on 05 March 2008

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean

scientific article

Genome-wide discovery and information resource development of DNA polymorphisms in cassava

scientific article

Genome-wide expression profiling of soybean two-component system genes in soybean root and shoot tissues under dehydration stress

scientific article published on 4 January 2011

Genome-wide identification and expression analysis of the CaNAC family members in chickpea during development, dehydration and ABA treatments

scientific article

Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress

scientific article published on 18 June 2011

Genomics and bioinformatics resources for crop improvement

scientific article

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops

scientific article published on 24 March 2011

Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals

scientific article

Highly efficient transgene-free targeted mutagenesis and single-stranded oligodeoxynucleotide-mediated precise knock-in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins

scientific article published on 11 June 2019

Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean.

scientific article published on 6 March 2010

Identification, Structural Characterization and Gene Expression Analysis of Members of the Nuclear Factor-Y Family in Chickpea ( L.) under Dehydration and Abscisic Acid Treatments

article

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean

scientific article

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants

scientific article published on 04 July 2011

Information Resources for Functional Genomics Studies in Brachypodium distachyon.

scientific article published in January 2018

Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources

scientific article

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

scientific article

Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

scientific article published on 13 May 2010

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.

scientific article published on 6 May 2008

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

scientific article

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.

scientific article published on 23 March 2018

Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis

scientific article published on 07 August 2014

Phosphate or nitrate imbalance induces stronger molecular responses than combined nutrient deprivation in roots and leaves of chickpea plants

scientific article published on 03 November 2020

RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments

scientific article published on 14 August 2017

SSR-based linkage map with new markers using an intraspecific population of common wheat.

scientific article published in February 2006

Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon

scientific article published on 19 October 2017

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

scientific article

The Basic Helix-Loop-Helix Transcription Factor GubHLH3 Positively Regulates Soyasaponin Biosynthetic Genes in Glycyrrhiza uralensis

scientific article published on 01 April 2018

Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat

scientific article published on 11 July 2006

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells

Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon

scientific article

Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production

scientific article

Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop

scientific article published on 22 May 2012

TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics

scientific article published on 2 January 2013

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

scientific article published on 15 May 2009

TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

scientific article

Unlocking Triticeae genomics to sustainably feed the future

scientific article

List of works by Keiichi Mochida

<i>KARRIKIN UPREGULATED F-BOX 1</i> negatively regulates drought tolerance in Arabidopsis

A Novel Mouse Model of iNKT Cell-deficiency Generated by CRISPR/Cas9 Reveals a Pathogenic Role of iNKT Cells in Metabolic Disease

A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis

A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond.

Advances in omics and bioinformatics tools for systems analyses of plant functions

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

BdWRKY38 is required for the incompatible interaction of Brachypodium distachyon with the necrotrophic fungus Rhizoctonia solani

Brachypodium as a model for the grasses: today and the future

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.

Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis

Comparative transcriptome analysis of nodules of two Mesorhizobium-chickpea associations with differential symbiotic efficiency under phosphate deficiency.

Confocal analysis of chromosome behavior in wheat x maize zygotes.

Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags

Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags

Correlation exploration of metabolic and genomic diversity in rice

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

Crop improvement using life cycle datasets acquired under field conditions

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.

Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags ⬇️

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume

Evaluation of Brachypodium distachyon L-Tyrosine Decarboxylase Using L-Tyrosine Over-Producing Saccharomyces cerevisiae

Exploring Genetic Diversity in Plants Using High-Throughput Sequencing Techniques.

Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags

Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

Functional genomics of soybean for improvement of productivity in adverse conditions.

Gene Co-expression Network Analysis Suggests the Existence of Transcriptional Modules Containing a High Proportion of Transcriptionally Differentiated Homoeologs in Hexaploid Wheat

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon. ⬇️

Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat.

Genome-wide analysis for identification of salt-responsive genes in common wheat

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean

Genome-wide discovery and information resource development of DNA polymorphisms in cassava

Genome-wide expression profiling of soybean two-component system genes in soybean root and shoot tissues under dehydration stress

Genome-wide identification and expression analysis of the CaNAC family members in chickpea during development, dehydration and ABA treatments

Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress

Genomics and bioinformatics resources for crop improvement

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops

Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals

Highly efficient transgene-free targeted mutagenesis and single-stranded oligodeoxynucleotide-mediated precise knock-in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins

Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean.

Identification, Structural Characterization and Gene Expression Analysis of Members of the Nuclear Factor-Y Family in Chickpea ( L.) under Dehydration and Abscisic Acid Treatments

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants

Information Resources for Functional Genomics Studies in Brachypodium distachyon.

Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.

Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis

Phosphate or nitrate imbalance induces stronger molecular responses than combined nutrient deprivation in roots and leaves of chickpea plants

RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments

SSR-based linkage map with new markers using an intraspecific population of common wheat.

Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

The Basic Helix-Loop-Helix Transcription Factor GubHLH3 Positively Regulates Soyasaponin Biosynthetic Genes in Glycyrrhiza uralensis

Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells

Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon

Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production

Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop

TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

Unlocking Triticeae genomics to sustainably feed the future