List of works - Michael C. Fontaine

A European melting pot of harbour porpoise in the French Atlantic coasts inferred from mitochondrial and nuclear data

scientific article (publication date: 2012)

A genomic perspective timely needed for re-evaluating the species delimitations, evolutionary trajectories, and conservation strategies of the Galapagos giant tortoises

Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

scientific article published in 2023

Assessing connectivity despite high diversity in island populations of a malaria mosquito

scientific article published on 28 October 2019

Assessing connectivity despite high diversity in island populations of the malaria mosquito Anopheles gambiae

scholarly article published 30 September 2018

Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species

scholarly article

Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.)

scientific article (publication date: 2011)

Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus ⬇️

scientific article published on September 13, 2010

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing

scientific article

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

scientific article

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

scientific article

Cytochrome P450 1A1 expression in cetacean skin biopsies from the Indian Ocean

scientific article published on 11 May 2011

Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator.

scientific article published in November 2014

Genetic footprint of Population Fragmentation and Contemporaneous Decline in the endangered Yangtze Finless Porpoise

Genetic footprint of population fragmentation and contemporary collapse in a freshwater cetacean

scientific article published on 31 October 2017

Genetic homogeneity in the face of morphological heterogeneity in the harbor porpoise from the Black Sea and adjacent waters (Phocoena phocoena relicta)

scientific article published on 26 November 2019

Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.

scientific article

Genetic signatures of variation in population size in a native fungal pathogen after the recent massive plantation of its host tree.

scientific article published on 20 September 2017

Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population.

scientific article

Genomic and proteomic identification of Late Holocene remains: Setting baselines for Black Sea odontocetes

article by Vincent Biard et al published October 2017 in Journal of Archaeological Science: Reports

Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica

scientific article (publication date: 16 December 2010)

Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugiu m

scientific article

Harbour Porpoises, Phocoena phocoena, in the Mediterranean Sea and Adjacent Regions: Biogeographic Relicts of the Last Glacial Period

scientific article

History of the invasion of the anther smut pathogen on Silene latifolia in North America

scientific article

Long-term feeding ecology and habitat use in harbour porpoises Phocoena phocoena from Scandinavian waters inferred from trace elements and stable isotopes.

scientific article

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

scientific article published on 13 September 2010

Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

scientific article published on 16 September 2020

Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling. ⬇️

scientific article

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

scientific article

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

scientific article published on 27 November 2014

No leading‐edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

scientific article published on 20 July 2017

Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication geneTeosinte-branched1in wild and domesticated pearl millet

article

Population Genomic Evidence of Adaptive Response during the Invasion History of <i>Plasmodium falciparum</i> in the Americas

scientific article published in 2023

Population structure, connectivity, and demographic history of an apex marine predator, the bull shark Carcharhinus leucas

scientific article published on 30 September 2019

Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

scientific article

Predator biomass and vegetation influence the coastal distribution of threespine stickleback morphotypes

scientific article published in 2021

Radiation with reticulation marks the origin of a major malaria vector

scientific article published on 01 December 2020

Resilience of harbor porpoises to anthropogenic disturbance: Must they really feed continuously?

article published in 2017

Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi

scientific article

The critically endangered vaquita is not doomed to extinction by inbreeding depression

scientific article published in 2022

The evolution of the Anopheles 16 genomes project

scientific article published on 08 July 2013

List of works by Michael C. Fontaine

A European melting pot of harbour porpoise in the French Atlantic coasts inferred from mitochondrial and nuclear data

A genomic perspective timely needed for re-evaluating the species delimitations, evolutionary trajectories, and conservation strategies of the Galapagos giant tortoises

Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Assessing connectivity despite high diversity in island populations of a malaria mosquito

Assessing connectivity despite high diversity in island populations of the malaria mosquito Anopheles gambiae

Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species

Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.)

Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus ⬇️

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Cytochrome P450 1A1 expression in cetacean skin biopsies from the Indian Ocean

Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator.

Genetic footprint of Population Fragmentation and Contemporaneous Decline in the endangered Yangtze Finless Porpoise

Genetic footprint of population fragmentation and contemporary collapse in a freshwater cetacean

Genetic homogeneity in the face of morphological heterogeneity in the harbor porpoise from the Black Sea and adjacent waters (Phocoena phocoena relicta)

Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.

Genetic signatures of variation in population size in a native fungal pathogen after the recent massive plantation of its host tree.

Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population.

Genomic and proteomic identification of Late Holocene remains: Setting baselines for Black Sea odontocetes

Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica

Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugiu m

Harbour Porpoises, Phocoena phocoena, in the Mediterranean Sea and Adjacent Regions: Biogeographic Relicts of the Last Glacial Period

History of the invasion of the anther smut pathogen on Silene latifolia in North America

Long-term feeding ecology and habitat use in harbour porpoises Phocoena phocoena from Scandinavian waters inferred from trace elements and stable isotopes.

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling. ⬇️

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

No leading‐edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication geneTeosinte-branched1in wild and domesticated pearl millet

Population Genomic Evidence of Adaptive Response during the Invasion History of <i>Plasmodium falciparum</i> in the Americas

Population structure, connectivity, and demographic history of an apex marine predator, the bull shark Carcharhinus leucas

Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

Predator biomass and vegetation influence the coastal distribution of threespine stickleback morphotypes

Radiation with reticulation marks the origin of a major malaria vector

Resilience of harbor porpoises to anthropogenic disturbance: Must they really feed continuously?

Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi

The critically endangered vaquita is not doomed to extinction by inbreeding depression

The evolution of the Anopheles 16 genomes project

Tools and Methods from the Anopheles 16 Genome Project