List of works - Zofia Gdaniec

A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs

scientific article

A locked derivative of 8-aza-7-deazaadenosine

scientific article

A reinvestigated mechanism of ribosylation of adenine under silylating conditions

Base-pair induced shifts in the tautomeric equilibrium of a modified DNA base

scientific article published on 01 March 1993

Bulged adenosine influence on the RNA duplex conformation in solution

scientific article

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair

scientific article published on 07 November 2019

Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids

scientific article

Diazepinoporphyrazines containing peripheral styryl substituents and their promising nanomolar photodynamic activity against oral cancer cells in liposomal formulations

scientific article

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats

scientific article

Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation.

scientific article published on 12 January 2018

Effect of Neighbors on the Conformational Preferences of Glycosidic Linkages in Glycyrrhizic Acid and Its Mono- and Dideprotonated Forms: X-ray, NMR, and Computational Studies

Effects of G-quadruplex topology on translational inhibition by tRNA fragments in mammalian and plant systems in vitro.

scientific article

Formation of an RNA Quadruplex-Duplex Hybrid in Living Cells between mRNA of the Epidermal Growth Factor Receptor (EGFR) and a G-Rich Antisense Oligoribonucleotide

scientific article published on 29 October 2020

Fusion of the (1)H NMR data of serum, urine and exhaled breath condensate in order to discriminate chronic obstructive pulmonary disease and obstructive sleep apnea syndrome

scientific article

Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs.

scientific article published on 24 October 2017

Iron Regulatory Element and Internal Loop/Bulge Structure for Ferritin mRNA Studied by Cobalt(III) Hexammine Binding, Molecular Modeling, and NMR Spectroscopy ⬇️

scientific article published on February 10, 1998

Iron regulatory element and internal Loop/Bulge structure for ferritin mRNA studied by Cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy

scientific article published on 01 April 1999

Mature miRNAs form secondary structure, which suggests their function beyond RISC.

scientific article

Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa

scientific article published in Scientific Reports

Methoxyamine-induced mutagenesis of nucleic acids. A proton NMR study of oligonucleotides containing N4-methoxycytosine paired with adenine or guanine

scientific article published on 01 December 1996

NMR and DFT study on media effects on proton transfer in hydrogen bonding: concept of molecular probe with an application to ionic and super-polar liquids

scientific article published on 27 July 2009

NMR and quantum chemistry study of mesoscopic effects in ionic liquids

scientific article

NMR probing of structural peculiarities in ionic solutions close to critical point.

scientific article

Overview of the RNA G-quadruplex structures

scientific article published on 2 November 2016

Photoaddition of 5-Bromouracil to Uracil in Oligonucleotides Leading to 5,5′-Bipyrimidine-Type Adducts: Mechanism of the Photoreaction

scientific article published on 05 December 2012

Photochemical behavior of 2-azidopurine tri-O-acetylribonucleoside in aqueous solution: unprecedented transformation into 1-(5'-O-acetyl-β-D-ribofuranosyl)-5-[(2-oxo-1,3,5-oxadiazocan-4-ylidene)amino]-1H-imidazole-4-carbaldehyde

scientific article

Photochemical studies and nanomolar photodynamic activities of phthalocyanines functionalized with 1,4,7-trioxanonyl moieties at their non-peripheral positions.

scientific article published on 14 November 2015

Photochemistry of 6-amino-2-azido, 2-amino-6-azido and 2,6-diazido analogues of purine ribonucleosides in aqueous solutions

2014 scientific article

Photocycloaddition of the T1 excited state of thioinosine to uridine and adenosine.

scientific article published on 26 June 2009

Photoinduced fluorescent cross-linking of 5-chloro- and 5-fluoro-4-thiouridines with thymidine.

scientific article published in February 2010

Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine

scientific article

Proof of ion-pair structures in ammonium-based protic ionic liquids using combined NMR and DFT/PCM-based chemical shift calculations

scientific article published on 6 September 2017

Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex

scientific article

Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes

scientific article published on 6 January 2016

The Suzuki cross-coupling reaction for the synthesis of porphyrazine possessing bulky 2,5-(biphenyl-4-yl)pyrrol-1-yl substituents in the periphery

The bulge region of HIV-1 TAR RNA binds metal ions in solution.

scientific article

The contribution of pseudouridine to stabilities and structure of RNAs

scientific article published on 24 December 2013

The effect of polysialic acid on molecular dynamics of model membranes studied by 31P NMR spectroscopy

scientific article published on 01 January 2004

The origin of the high stability of 3'-terminal uridine tetrads. The contributions of hydrogen bonding, stacking interactions and steric factors evaluated using modified oligonucleotide analogs

scientific article published on 23 September 2020

The spontaneous rearrangement of 2,4-dinitrophenyl substituent in ribonucleosides under neutral conditions

scientific article published on September 2010

Thermodynamic Features of Structural Motifs Formed by β-L-RNA

scientific article

Thermodynamic Stability of RNA Structures Formed by CNG Trinucleotide Repeats. Implication for Prediction of RNA Structure†

scientific article published in August 2005

Thermodynamic and structural contributions of the 6-thioguanosine residue to helical properties of RNA

scientific article published on 13 March 2019

Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus

scientific article published on 19 October 2018

Very short NMR relaxation times of anions in ionic liquids: new pulse sequence to eliminate the acoustic ringing

scientific article

List of works by Zofia Gdaniec

A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs

A locked derivative of 8-aza-7-deazaadenosine

A reinvestigated mechanism of ribosylation of adenine under silylating conditions

Base-pair induced shifts in the tautomeric equilibrium of a modified DNA base

Bulged adenosine influence on the RNA duplex conformation in solution

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair

Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids

Diazepinoporphyrazines containing peripheral styryl substituents and their promising nanomolar photodynamic activity against oral cancer cells in liposomal formulations

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats

Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation.

Effect of Neighbors on the Conformational Preferences of Glycosidic Linkages in Glycyrrhizic Acid and Its Mono- and Dideprotonated Forms: X-ray, NMR, and Computational Studies

Effects of G-quadruplex topology on translational inhibition by tRNA fragments in mammalian and plant systems in vitro.

Formation of an RNA Quadruplex-Duplex Hybrid in Living Cells between mRNA of the Epidermal Growth Factor Receptor (EGFR) and a G-Rich Antisense Oligoribonucleotide

Fusion of the (1)H NMR data of serum, urine and exhaled breath condensate in order to discriminate chronic obstructive pulmonary disease and obstructive sleep apnea syndrome

Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs.

Iron Regulatory Element and Internal Loop/Bulge Structure for Ferritin mRNA Studied by Cobalt(III) Hexammine Binding, Molecular Modeling, and NMR Spectroscopy ⬇️

Iron regulatory element and internal Loop/Bulge structure for ferritin mRNA studied by Cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy

Mature miRNAs form secondary structure, which suggests their function beyond RISC.

Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa

Methoxyamine-induced mutagenesis of nucleic acids. A proton NMR study of oligonucleotides containing N4-methoxycytosine paired with adenine or guanine

NMR and DFT study on media effects on proton transfer in hydrogen bonding: concept of molecular probe with an application to ionic and super-polar liquids

NMR and quantum chemistry study of mesoscopic effects in ionic liquids

NMR probing of structural peculiarities in ionic solutions close to critical point.

Overview of the RNA G-quadruplex structures

Photoaddition of 5-Bromouracil to Uracil in Oligonucleotides Leading to 5,5′-Bipyrimidine-Type Adducts: Mechanism of the Photoreaction

Photochemical behavior of 2-azidopurine tri-O-acetylribonucleoside in aqueous solution: unprecedented transformation into 1-(5'-O-acetyl-β-D-ribofuranosyl)-5-[(2-oxo-1,3,5-oxadiazocan-4-ylidene)amino]-1H-imidazole-4-carbaldehyde

Photochemical studies and nanomolar photodynamic activities of phthalocyanines functionalized with 1,4,7-trioxanonyl moieties at their non-peripheral positions.

Photochemistry of 6-amino-2-azido, 2-amino-6-azido and 2,6-diazido analogues of purine ribonucleosides in aqueous solutions

Photocycloaddition of the T1 excited state of thioinosine to uridine and adenosine.

Photoinduced fluorescent cross-linking of 5-chloro- and 5-fluoro-4-thiouridines with thymidine.

Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine

Proof of ion-pair structures in ammonium-based protic ionic liquids using combined NMR and DFT/PCM-based chemical shift calculations

Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex

Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes

The Suzuki cross-coupling reaction for the synthesis of porphyrazine possessing bulky 2,5-(biphenyl-4-yl)pyrrol-1-yl substituents in the periphery

The bulge region of HIV-1 TAR RNA binds metal ions in solution.

The contribution of pseudouridine to stabilities and structure of RNAs

The effect of polysialic acid on molecular dynamics of model membranes studied by 31P NMR spectroscopy

The origin of the high stability of 3'-terminal uridine tetrads. The contributions of hydrogen bonding, stacking interactions and steric factors evaluated using modified oligonucleotide analogs

The spontaneous rearrangement of 2,4-dinitrophenyl substituent in ribonucleosides under neutral conditions

Thermodynamic Features of Structural Motifs Formed by β-L-RNA

Thermodynamic Stability of RNA Structures Formed by CNG Trinucleotide Repeats. Implication for Prediction of RNA Structure†

Thermodynamic and structural contributions of the 6-thioguanosine residue to helical properties of RNA

Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus

Very short NMR relaxation times of anions in ionic liquids: new pulse sequence to eliminate the acoustic ringing