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List of works by Alan McNally

'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution

scientific article published on February 2016

<i>Enterobacteriaceae</i> and <i>Bacteroidaceae</i> provide resistance to travel-associated intestinal colonization by multi-drug resistant <i>Escherichia coli</i>

scientific article published in 2022

A new variant of mcr-3 in an extensively drug-resistant Escherichia coli clinical isolate carrying mcr-1 and blaNDM-5. ⬇️

scientific article published on 2 October 2017

Acquisition and Loss of CTX-M-Producing and Non-Producing Escherichia coli in the Fecal Microbiome of Travelers to South Asia

article

All Yersinia enterocolitica are pathogenic: virulence of phylogroup 1 Y. enterocolitica in a Galleria mellonella infection model

scientific article published on 24 May 2016

Allelic polymorphism shapes community function in evolving Pseudomonas aeruginosa populations

scientific article published on 27 April 2020

An aflagellate mutant Yersinia enterocolitica biotype 1A strain displays altered invasion of epithelial cells, persistence in macrophages, and cytokine secretion profiles in vitro

scientific article published on May 2007

Antibiotic resistance genes are abundant and diverse in raw sewage used for urban agriculture in Africa and associated with urban population density

scientific article published on 30 April 2019

Bacterial Microcompartment-Mediated Ethanolamine Metabolism in Escherichia coli Urinary Tract Infection

scientific article published on 23 July 2019

Cj1136 is required for lipooligosaccharide biosynthesis, hyperinvasion, and chick colonization by Campylobacter jejuni

scientific article

Clinically Relevant Plasmid-Host Interactions Indicate that Transcriptional and Not Genomic Modifications Ameliorate Fitness Costs of Klebsiella pneumoniae Carbapenemase-Carrying Plasmids.

scientific article published on 24 April 2018

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

scientific article

Comparative genome analysis identifies few traits unique to the Escherichia coli ST131 H30Rx clade and extensive mosaicism at the capsule locus

scientific article

Comparison of the biotypes of Yersinia enterocolitica isolated from pigs, cattle and sheep at slaughter and from humans with yersiniosis in Great Britain during 1999-2000.

scientific article published on January 2004

Complete genomic characterization of two Escherichia coli lineages responsible for a cluster of carbapenem-resistant infections in a Chinese hospital

article

Convergent amino acid signatures in polyphyletic Campylobacter jejuni sub-populations suggest human niche tropism

scientific article published on 14 February 2018

Cryptic transmission of ST405 Escherichia coli carrying bla NDM-4 in hospital.

scientific article published on 10 January 2018

Development of rapid, automated diagnostics for infectious disease: advances and challenges

scientific article

Differences in levels of secreted locus of enterocyte effacement proteins between human disease-associated and bovine Escherichia coli O157.

retracted scientific article published on August 2001

Directional gene flow and ecological separation in Yersinia enterocolitica

scientific article

Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types

scientific article published in 2022

Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection

scientific article published on 23 April 2019

Do we really understand how faecal microbiota transplantation works?

scientific article published on 16 March 2019

Draft Genome Sequence of "Candidatus Cronobacter colletis" NCTC 14934T, a New Species in the Genus Cronobacter.

scientific article

Draft Genome Sequence of a Meningitic Isolate of Cronobacter sakazakii Clonal Complex 4, Strain 8399

scientific article published on 10 October 2013

Draft Genome Sequence of the Earliest Cronobacter sakazakii Sequence Type 4 Strain, NCIMB 8272

scientific article published on 26 September 2013

Draft Genome Sequences of Three Newly Identified Species in the Genus Cronobacter, C. helveticus LMG23732T, C. pulveris LMG24059, and C. zurichensis LMG23730T.

scientific article published on 26 September 2013

Effect of substitutions in the thiamin diphosphate-magnesium fold on the activation of the pyruvate dehydrogenase complex from Escherichia coli by cofactors and substrate.

scientific article

Escherichia coli of sequence type 3835 carrying bla NDM-1, bla CTX-M-15, bla CMY-42 and bla SHV-12.

scientific article published on 21 July 2015

Evolutionary dynamics of the Yersinia enterocolitica complex

scientific article published on January 2012

Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex.

scientific article published on 20 March 2015

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

scientific article published in 2021

Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni

scientific article published on 24 October 2015

Genomic analysis of extra-intestinal pathogenic Escherichia coli urosepsis.

scientific article published on 10 April 2013

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections.

scientific article

Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648

scientific article published on 24 May 2019

Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit.

scientific article published on 5 October 2015

Genomic epidemiology of clinical Campylobacter spp. at a single health trust site

article

Genomics and pathotypes of the many faces of Escherichia coli

scientific article published in 2022

Handwashing sinks as the source of transmission of ST16 carbapenem-resistant Klebsiella pneumoniae, an international high-risk clone, in an intensive care unit

scientific article published on 10 October 2019

How to establish an academic SARS-CoV-2 testing laboratory

scientific article published on 02 November 2020

Identification and typing of Yersinia enterocolitica and Yersinia pseudotuberculosis isolated from human clinical specimens in England between 2004 and 2018

scientific article published on 19 March 2019

Identification of Mycobacterium chimaera in heater-cooler units in China.

scientific article published on 18 May 2018

IncP Plasmid Carrying Colistin Resistance Gene mcr-1 in Klebsiella pneumoniae from Hospital Sewage

scientific article

Increase in bacteraemia cases in the East Midlands region of the UK due to MDR Escherichia coli ST73: high levels of genomic and plasmid diversity in causative isolates.

scientific article published on 30 October 2015

Increased human pathogenic potential of Escherichia coli from polymicrobial urinary tract infections in comparison to isolates from monomicrobial culture samples.

scientific article published on 14 October 2010

Infection dynamics of highly pathogenic avian influenza and virulent avian paramyxovirus type 1 viruses in chickens, turkeys and ducks.

scientific article

Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections

scientific article

Intestinal carriage of verocytotoxigenic Escherichia coli O157, Salmonella, thermophilic Campylobacter and Yersinia enterocolitica, in cattle, sheep and pigs at slaughter in Great Britain during 2003.

scientific article published on 26 July 2007

Key evolutionary events in the emergence of a globally disseminated, carbapenem resistant clone in the Escherichia coli ST410 lineage

scientific article published on 29 August 2019

Klebsiella pneumoniae type VI secretion system-mediated microbial competition is PhoPQ controlled and reactive oxygen species dependent

scientific article published on 19 March 2020

Limited and Strain-Specific Transcriptional and Growth Responses to Acquisition of a Multidrug Resistance Plasmid in Genetically Diverse Escherichia coli Lineages

scientific article published in 2021

Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings

scientific article

Multidrug-resistant Escherichia coli bacteremia

scientific article published on October 2013

NDM Metallo-β-Lactamases and Their Bacterial Producers in Health Care Settings

scientific article published on 30 January 2019

Nanoparticles detect infection ⬇️

scientific article published on May 1, 2013

Occurrence of Enterobacter hormaechei carrying blaNDM-1 and blaKPC-2 in China

scientific article published on 19 October 2017

Occurrence of colistin-resistant hypervirulent Klebsiella variicola

scientific article published on 01 November 2018

Optimised chronic infection models demonstrate that siderophore 'cheating' in Pseudomonas aeruginosa is context specific.

scientific article published on 11 July 2017

Parallel independent evolution of pathogenicity within the genus Yersinia

scientific article

Phenotypic microarrays suggest Escherichia coli ST131 is not a metabolically distinct lineage of extra-intestinal pathogenic E. coli

scientific article (publication date: 2014)

Phylogeographic separation and formation of sexually discrete lineages in a global population of Yersinia pseudotuberculosis

scientific article

Phytoremediation as a Tool to Remove Drivers of Antimicrobial Resistance in the Aquatic Environment

scientific article published in 2023

Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection

scientific article

Remarkable Diversity of Escherichia coli Carrying mcr-1 from Hospital Sewage with the Identification of Two New mcr-1 Variants

scientific article

Reply to 'The population genetics of pangenomes'.

scientific article published in December 2017

Response to 'Refined analyses suggest that recombination is a minor source of genomic diversity in Pseudomonas aeruginosa chronic cystic fibrosis infections' by ).

scientific article published on 2 March 2016

Sequence ST273 carbapenem-resistant Klebsiella pneumoniae carrying blaNDM-1 and blaIMP-4.

scientific article

The Ecology and Evolution of Pangenomes

scientific article published on 01 October 2019

The Occurence of Colistin-Resistant Hypervirulent in China

article

The co-transfer of plasmid-borne colistin-resistant genes mcr-1 and mcr-3.5, the carbapenemase gene bla and the 16S methylase gene rmtB from Escherichia coli

scientific article published in Scientific Reports

The coexistence of three blaKPC-2 genes on an IncF/IncR plasmid in ST11 Klebsiella pneumoniae

article

The coexistence of two blaNDM-5 genes on an IncF plasmid as revealed by nanopore sequencing

scientific article published on 12 February 2018

The evolution and transmission of multi-drug resistant Escherichia coli and Klebsiella pneumoniae: the complexity of clones and plasmids

scientific article published on 17 July 2019

The evolutionary path to extraintestinal pathogenic, drug-resistant Escherichia coli is marked by drastic reduction in detectable recombination within the core genome

scientific article published on January 2013

Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels

scientific article

Validated H5 Eurasian real-time reverse transcriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006.

scientific article published in March 2007

Validation testing to determine the sensitivity of lateral flow testing for asymptomatic SARS-CoV-2 detection in low prevalence settings: Testing frequency and public health messaging is key

scientific article published in April 2021

Wastewater used for urban agriculture in West Africa as a reservoir for antibacterial resistance dissemination

article

Why prokaryotes have pangenomes ⬇️

scientific article published on 28 March 2017

Yersinia enterocolitica isolates of differing biotypes from humans and animals are adherent, invasive and persist in macrophages, but differ in cytokine secretion profiles in vitro

scientific article published on December 2006

blaNDM-21, a new variant of blaNDM in an Escherichia coli clinical isolate carrying blaCTX-M-55 and rmtB

scientific article published on 01 September 2018

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