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List of works by Mushal Allam

A novel adenovirus isolated from the Egyptian fruit bat in South Africa is closely related to recent isolates from China.

scientific article published on 25 June 2018

Biological crusts of serpentine and non-serpentine soils from the Barberton Greenstone Belt of South Africa

scientific article published in 2017

Comparative Genome Analysis of Bacillus sporothermodurans with Its Closest Phylogenetic Neighbor, Bacillus oleronius, and Bacillus cereus and Bacillus subtilis Groups

scientific article published on 04 August 2020

Comparative Pathogenomics of <i>Aeromonas veronii</i> from Pigs in South Africa: Dominance of the Novel ST657 Clone

scientific article published on 16 December 2020

Complete Genome Sequence of a Staphylococcus aureus Isolate from a Nasopharyngeal Swab from a Mine Worker in South Africa

scientific article published on 12 December 2019

Draft Genome Sequence of Methicillin Resistant Staphylococcus epidermidis Isolate from Swine

Draft Genome Sequence of Mycobacterium peregrinum Isolated from an HIV-Positive Patient in South Africa

scientific article

Draft Genome Sequence of Providencia rettgeri APW139_S1, an NDM-18-Producing Clinical Strain Originating from Hospital Effluent in South Africa

Draft Genome Sequence of a Multidrug-Resistant Serratia marcescens Strain, Isolated from a Patient with Peritoneal Cancer in South Africa

scientific article published on 29 June 2017

Draft genome sequence of Bacillus oleronius DSM 9356 isolated from the termite Reticulitermes santonensis

scientific article published on 24 March 2017

Draft genome sequence of an extended-spectrum β-lactamase (CTX-M-15)-producing Escherichia coli ST10 isolated from a nasal sample of an abattoir worker in Cameroon

scientific article published on 19 June 2018

Draft genome sequences of extended-spectrum β-lactamase-producing Enterobacter aerogenes isolated from swine and human

scientific article published on 20 June 2018

Evidence for both Intermittent and Persistent Compartmentalization of HIV-1 in the Female Genital Tract

scientific article published on 01 May 2019

Extended-spectrum beta-lactamase-producing Escherichia coli harbouring mcr-1 gene isolated from pigs in South Africa

scientific article published on 02 October 2018

First Whole-Genome Sequence of a Highly Resistant Klebsiella pneumoniae Sequence Type 14 Strain Isolated from Sudan

scientific article published on 08 August 2019

Genome Analysis of ESBL-Producing Escherichia coli Isolated from Pigs

scientific article published in 2022

Genome Mining and Comparative Pathogenomic Analysis of An Endemic Methicillin-Resistant Staphylococcus Aureus (MRSA) Clone, ST612-CC8-t1257-SCCmec_IVd(2B), Isolated in South Africa

scientific article published on 27 September 2019

Genome Sequence for Shiga Toxin-Producing Escherichia coli O26:H11, Associated with a Cluster of Hemolytic-Uremic Syndrome Cases in South Africa, 2017.

scientific article published on 21 September 2017

Genome Sequence of Escherichia coli Clone O25:H4 Sequence Type 131, Isolated from a Sudanese Patient with Urinary Tract Infection

scientific article published on 12 March 2020

Genome Sequence of a Novel Enterococcus faecalis Sequence Type 922 Strain Isolated from a Door Handle in the Intensive Care Unit of a District Hospital in Durban, South Africa

scientific article published on 29 August 2019

Genome Sequences of Bacillus sporothermodurans Strains Isolated from Ultra-High-Temperature Milk

scientific article published on 30 May 2019

Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon

scientific article published on 9 February 2018

Genome Sequencing of a Severe Acute Respiratory Syndrome Coronavirus 2 Isolate Obtained from a South African Patient with Coronavirus Disease 2019

scientific article published on 02 July 2020

Genome analysis of methicillin-resistant Staphylococcus aureus isolated from pigs: Detection of the clonal lineage ST398 in Cameroon and South Africa

scientific article published on 24 May 2019

Genomic Analysis of Carbapenemase-Producing Extensively Drug-Resistant Klebsiella pneumoniae Isolates Reveals the Horizontal Spread of p18-43_01 Plasmid Encoding blaNDM-1 in South Africa

scientific article published on 17 January 2020

Genomic analysis of methicillin-resistant Staphylococcus aureus isolated from poultry and occupational farm workers in Umgungundlovu District, South Africa

scientific article published on 09 March 2019

Genomic analysis of nontypeable pneumococci causing invasive pneumococcal disease in South Africa, 2003-2013

scientific article

Genomic characterisation of Klebsiella michiganensis co-producing OXA-181 and NDM-1 carbapenemases isolated from a cancer patient in uMgungundlovu District, KwaZulu-Natal Province, South Africa

scientific article published on 13 December 2018

Genomic characterisation of Staphylococcus aureus ST121 isolated from hospitalised patients in South Africa

scientific article published on 26 November 2018

Genomic characterization of multidrug-resistant ESBL-producing Klebsiella pneumoniae isolated from a Ghanaian teaching hospital

scientific article published on 23 May 2019

Genomic differences among carriage and invasive nontypeable pneumococci circulating in South Africa ⬇️

scientific article published on 11 October 2019

Human Blastomycosis in South Africa Caused by Blastomyces percursus and Blastomyces emzantsi sp. nov., 1967 to 2014

scientific article published on 24 February 2020

Human surveillance and phylogeny of highly pathogenic avian influenza A(H5N8) during an outbreak in poultry in South Africa, 2017

scientific article published on 14 February 2020

Hyper-reactive Malarial Splenomegaly (HMS) in malaria endemic area in Eastern Sudan

scientific article published on 7 October 2007

Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing

scientific article

Inflammatory markers as predictors of mortality in COVID-19 infection

scientific article published on 21 December 2020

Invasive disease caused simultaneously by dual serotypes of Streptococcus pneumoniae

scientific article published on 8 November 2017

Molecular Characterization of Corynebacterium diphtheriae Outbreak Isolates, South Africa, March-June 2015

scientific article

Molecular characterization of invasive capsule null Neisseria meningitidis in South Africa ⬇️

scientific article

Outbreak of Listeria monocytogenes in South Africa, 2017-2018: Laboratory Activities and Experiences Associated with Whole-Genome Sequencing Analysis of Isolates

scientific article published on 10 May 2019

Outbreak of Listeriosis in South Africa Associated with Processed Meat

scientific article published on 01 February 2020

Pathogenomic Analysis of a Novel Extensively Drug-Resistant Citrobacter freundii Isolate Carrying a blaNDM-1 Carbapenemase in South Africa

scientific article published on 31 January 2020

Phenotypic and genotypic characterisation of an unique indigenous hypersaline unicellular cyanobacterium, Euhalothece sp.nov

scientific article published on 03 April 2018

Phylodynamic Analysis of Ebola Virus Disease Transmission in Sierra Leone

article

Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989 to 2013.

scientific article published on 9 March 2016

Phylogenetic Characterisation of the Full Genome of a Bagaza Virus Isolate from Bird Fatalities in South Africa

scientific article published on 07 July 2022

Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa

Whole-Genome Sequence of Acinetobacter baumannii Strain NUBRI-A, Isolated from a Hospitalized Patient in Khartoum, Sudan

scientific article published on 08 August 2019

Whole-Genome Sequence of High-Risk Clone Sequence Type 111 of Pseudomonas aeruginosa Strain NUBRI-P, Isolated from a Wounded Sudanese Patient

scientific article published on 03 October 2019

Whole-Genome Sequence of a Mycobacterium goodii Isolate from a Pediatric Patient in South Africa

scientific article published on 18 January 2018

Whole-Genome Sequence of a Novel Sequence Type 3136 Carbapenem-Resistant Klebsiella pneumoniae Strain Isolated from a Hospitalized Patient in Durban, South Africa

scientific article published on 13 December 2018

Whole-Genome Sequences of Listeria monocytogenes Sequence Type 6 Isolates Associated with a Large Foodborne Outbreak in South Africa, 2017 to 2018.

scientific article

Whole-Genome Sequences of Two Multidrug-Resistant Acinetobacter baumannii Strains Isolated from Patients with Urinary Tract Infection in Ghana

scientific article published on 01 August 2019

Whole-Genome Sequencing of a Mycobacterium tuberculosis Strain Belonging to Lineage 1 (Indo-Oceanic) and the East African Indian Spoligotype, Isolated in Jazan, Saudi Arabia

scientific article published on 13 August 2020

Whole-Genome Shotgun Sequence of Drug-Resistant Staphylococcus aureus Strain SA9, Isolated from a Slaughterhouse Chicken Carcass in South Africa

scientific article published on 13 June 2019

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