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List of works by João Paulo Gomes

A Multi-Component Prime-Boost Vaccination Regimen with a Consensus MOMP Antigen Enhances Chlamydia trachomatis Clearance

scientific article published on 28 April 2016

A large outbreak of Legionnaires’ Disease in an industrial town in Portugal

article

A retrospective cross-sectional quantitative molecular approach in biological samples from patients with syphilis.

scientific article published on February 2017

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

scientific article published on 02 November 2023

Adaptive Evolution of the Chlamydia trachomatis Dominant Antigen Reveals Distinct Evolutionary Scenarios for B- and T-cell Epitopes: Worldwide Survey ⬇️

scientific article published on October 5, 2010

Allelic diversity among Helicobacter pylori outer membrane protein genes homB and homA generated by recombination

scientific article

Aminobenzylated 4-Nitrophenols as Antibacterial Agents Obtained from 5-Nitrosalicylaldehyde through a Petasis Borono-Mannich Reaction

scientific article published on 29 November 2018

An integrated strategy to identify key genes in almond adventitious shoot regeneration.

scientific article published on 11 August 2009

Assessment of the load and transcriptional dynamics of Chlamydia trachomatis plasmid according to strains' tissue tropism.

scientific article published on 13 April 2013

Bioinformatic Analysis of Chlamydia trachomatis Polymorphic Membrane Proteins PmpE, PmpF, PmpG and PmpH as Potential Vaccine Antigens

scientific article published on July 2015

Burkholderia pseudomallei: First case of melioidosis in Portugal

scientific article

Candida auris in Intensive Care Setting: The First Case Reported in Portugal

scientific article published in 2023

Capsular Type, Sequence Type and Microbial Resistance Factors Impact on DNase Activity of Streptococcus agalactiae Strains from Human and Bovine Origin

scientific article published on 11 December 2018

Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors

scientific article published on 24 July 2015

Chlamydia trachomatis diversity viewed as a tissue-specific coevolutionary arms race

scientific article published on 23 October 2008

Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature

scientific article published on 01 November 2019

Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains

scientific article

Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3.

scientific article published on 23 January 2014

Congenital neurosyphilis - authors' reply

scientific article

Construction of improved tools for protein localization studies in Streptococcus pneumoniae

scientific article

Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis

scientific article published on 13 July 2005

Could we miss congenital neurosyphilis?

scientific article published on 24 September 2012

CteG is a Chlamydia trachomatis effector protein that associates with the Golgi complex of infected host cells

scientific article published on 16 April 2019

Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation.

scientific article published on 03 March 2015

Differential Role of the T6SS in Acinetobacter baumannii Virulence

scientific article

Directional evolution of Chlamydia trachomatis towards niche-specific adaptation.

scientific article

Dissecting whole-genome sequencing-based online tools for predicting resistance in Mycobacterium tuberculosis: can we use them for clinical decision guidance?

scientific article

Estimated number of lives directly saved by COVID-19 vaccination programs in the WHO European Region, December 2020 to March 2023

Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis

article

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

scientific article

Evolution, phylogeny, and molecular epidemiology of Chlamydia.

scientific article published on 05 February 2014

Evolutionary dynamics of ompA, the gene encoding the Chlamydia trachomatis key antigen

scientific article published on 25 September 2009

EzrA contributes to the regulation of cell size in Staphylococcus aureus

scientific article

Genetic determinants of high-level oxacillin resistance in MRSA.

scientific article published on 19 March 2018

Genital infection by Chlamydia trachomatis in Lisbon: prevalence and risk markers.

scientific article published on August 2002

Genome Sequencing of 10 Helicobacter pylori Pediatric Strains from Patients with Nonulcer Dyspepsia and Peptic Ulcer Disease.

scientific article

Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation

scientific article published on 17 October 2016

Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins

scientific article published on 16 February 2017

Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009).

scientific article published on November 2010

Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars.

scientific article published on 26 July 2017

Helicobacter pullorum isolated from fresh chicken meat: antibiotic resistance and genomic traits of an emerging foodborne pathogen

scientific article

High-level tetracycline resistant Neisseria gonorrhoeae isolated in Portugal

scientific article published on May 1, 1997

INSaFLU: an automated open web-based bioinformatics suite "from-reads" for influenza whole-genome-sequencing-based surveillance.

scientific article published on 29 June 2018

Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system

scientific article

Imipenem Resistance in Clostridium difficile Ribotype 017, Portugal.

scientific article published in April 2018

Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups.

scientific article published on 24 February 2005

Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis

scientific article

In Vitro Activity of Quaternary Ammonium Surfactants against Streptococcal, Chlamydial, and Gonococcal Infective Agents.

scientific article published on 14 March 2016

In silico scrutiny of genes revealing phylogenetic congruence with clinical prevalence or tropism properties of Chlamydia trachomatis strains

scientific article

Insights into the population structure and pan-genome of Haemophilus influenzae

scientific article published on 31 October 2018

Insights on Klebsiella pneumoniae Biofilms Assembled on Different Surfaces Using Phenotypic and Genotypic Approaches

scientific article

Isolation and molecular characterization of Toxoplasma gondii isolated from pigeons and stray cats in Lisbon, Portugal

scientific article published on 26 August 2014

Legionella pneumophila strain associated with the first evidence of person-to-person transmission of Legionnaires' disease: a unique mosaic genetic backbone

scientific article published on 19 May 2016

Lung abscess due to Neisseria meningitidis serogroup X-unexpected virulence of a commensal resulting from putative serogroup B capsular switching

scientific article published on 14 July 2020

Lymphogranuloma venereum in Portugal: unusual events and new variants during 2007.

scientific article published on February 2009

Molecular and virulence characterization of Toxoplasma gondii strains isolated from humans in Portugal

scientific article

Molecular characterization and antimicrobial susceptibility profiles in Streptococcus agalactiae colonizing strains: association of erythromycin resistance with subtype III-1 genetic clone family.

scientific article published in September 2010

Molecular epidemiology of group B streptococcal meningitis in children beyond the neonatal period from Angola.

scientific article

Molecular typing of treponema pallidum clinical strains from Lisbon, Portugal

scientific article published on 27 August 2008

Multidrug-Resistant Salmonella enterica Serovar Rissen Clusters Detected in Azores Archipelago, Portugal

scientific article published on 14 December 2019

Multiomics Assessment of Gene Expression in a Clinical Strain of CTX-M-15-Producing ST131 Escherichia coli

article

Multiomics Substrates of Resistance to Emerging Pathogens? Transcriptome and Proteome Profile of a Vancomycin-Resistant Enterococcus faecalis Clinical Strain

scientific article published on 01 February 2020

Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution

scientific article published on 29 March 2022

Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages.

scientific article

Optimization of fluorescent tools for cell biology studies in Gram-positive bacteria

scientific article

Parasite communities in stray cat populations from Lisbon, Portugal.

scientific article

Partner notification for chlamydia trachomatis urogenital infections: eight years of patient referral experience in the major Portuguese sexually transmitted infections clinic, 2000-07.

scientific article published on October 2011

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

scientific article published in 2022

Phenotypic signatures and genetic determinants of oxacillin tolerance in a laboratory mutant of Staphylococcus aureus

scientific article published in PLoS ONE

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

scientific article published on 24 June 2022

Polymorphisms in inc proteins and differential expression of inc genes among Chlamydia trachomatis strains correlate with invasiveness and tropism of lymphogranuloma venereum isolates

scientific article

Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism.

scientific article

Pooling urine samples for PCR screening of C. trachomatis urogenital infection in women.

scientific article published in February 2001

Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

scientific article

Quaternary ammonium surfactant structure determines selective toxicity towards bacteria: mechanisms of action and clinical implications in antibacterial prophylaxis

scientific article published on 17 December 2015

Sensitivity evaluation of the Gen-Probe AMP-CT assay by pooling urine samples for the screening of Chlamydia trachomatis urogenital infection.

scientific article published on August 2002

The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen

scientific article published on September 2017

The expression of Helicobacter pylori tfs plasticity zone cluster is regulated by pH and adherence, and its composition is associated with differential gastric IL-8 secretion

scientific article published on 24 April 2017

The inhibition of the apoptosis pathway by the Coxiella burnetii effector protein CaeA requires the EK repetition motif, but is independent of survivin

scientific article published on 13 January 2016

Towards a rapid sequencing-based molecular surveillance and mosaicism investigation of Toxoplasma gondii

scientific article published on 02 January 2020

Toxoplasma gondii seroprevalence in the Portuguese population: comparison of three cross-sectional studies spanning three decades

scientific article published on 05 October 2016

Virulence and antibiotic resistance plasticity of Arcobacter butzleri: Insights on the genomic diversity of an emerging human pathogen

scientific article published on 30 January 2020

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