List of works - Hossein Khiabanian

A Case of T-cell Acute Lymphoblastic Leukemia Relapsed As Myeloid Acute Leukemia

scientific article published on 03 May 2016

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

scientific article (publication date: September 2013)

Activating mutations and translocations in the guanine exchange factor VAV1 in peripheral T-cell lymphomas

scientific article published on 06 January 2017

Activating mutations in the NT5C2 nucleotidase gene drive chemotherapy resistance in relapsed ALL.

scientific article

All-FIT: allele-frequency-based imputation of tumor purity from high-depth sequencing data

scientific article published on 01 April 2020

Alterations to the Esophageal Microbiome Associated with Progression from Barrett's Esophagus to Esophageal Adenocarcinoma

scientific article published on 29 August 2019

Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation

scientific article

Association of JAK2-V617F Mutations Detected by Solid Tumor Sequencing With Coexistent Myeloproliferative Neoplasms

scientific article published on 01 February 2019

Barrett's esophagus is associated with a distinct oral microbiome.

scientific article published on 20 February 2018

Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia

scientific article

Clinical impact of small subclones harboring NOTCH1, SF3B1 or BIRC3 mutations in chronic lymphocytic leukemia

scientific article published on 27 January 2016

Clonal evolution mechanisms in NT5C2 mutant-relapsed acute lymphoblastic leukaemia

scientific article published on 17 January 2018

Complete Regression of Advanced Pancreatic Ductal Adenocarcinomas upon Combined Inhibition of EGFR and C-RAF

scientific article published on 08 April 2019

Data-driven discovery of seasonally linked diseases from an Electronic Health Records system

scientific article

De novo transcriptome reconstruction and annotation of the Egyptian rousette bat.

scientific article published on 7 December 2015

Detection of Three Distinct Clonal Populations Using Circulating Cell Free DNA: A Cautionary Note on the Use of Liquid Biopsy

scientific article published on 31 July 2019

Detection of clonal hematopoiesis of indeterminate potential in clinical sequencing of solid tumor specimens.

scientific article published on 20 April 2018

Differences in patient age distribution between influenza A subtypes.

scientific article

Discovering disease associations by integrating electronic clinical data and medical literature

scientific article (publication date: 2011)

Emerging Role of Genomic Rearrangements in Breast Cancer: Applying Knowledge from Other Cancers

scientific article

Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration

scientific article

Gamma Secretase Inhibition by BMS-906024 Enhances Efficacy of Paclitaxel in Lung Adenocarcinoma

scientific article published on 4 October 2017

Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness

scientific article published on 18 February 2014

Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome

scientific article published on 14 October 2013

Genetics of follicular lymphoma transformation

scientific article

Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus

scientific article

High-resolution Genomic Surveillance of 2014 Ebolavirus Using Shared Subclonal Variants

scientific article published on 9 February 2015

Increasing Dietary Fiber Intake Is Associated with a Distinct Esophageal Microbiome

scientific article published on 25 October 2018

Inference of Germline Mutational Status and Evaluation of Loss of Heterozygosity in High-Depth, Tumor-Only Sequencing Data

Integrated mutational and cytogenetic analysis identifies new prognostic subgroups in chronic lymphocytic leukemia

scientific article

Lactobacillus rhamnosus GG probiotic enteric regimen does not appreciably alter the gut microbiome or provide protection against GVHD after allogeneic hematopoietic stem cell transplantation.

scientific article

Leukaemogenesis induced by an activating β-catenin mutation in osteoblasts

scientific article

MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications.

scientific article

Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns

scholarly article by Sakellarios Zairis et al published 2014 in Lecture Notes in Computer Science

Mutational landscape, clonal evolution patterns, and role of RAS mutations in relapsed acute lymphoblastic leukemia

scientific article published on 21 September 2016

Mutations of the SF3B1 splicing factor in chronic lymphocytic leukemia: association with progression and fludarabine-refractoriness

scientific article (publication date: 28 October 2011)

On statistical modeling of sequencing noise in high depth data to assess tumor evolution

article by Raúl Rabadán et al published July 2018 in Journal of Statistical Physics

PHF6 mutations in T-cell acute lymphoblastic leukemia

scientific article (publication date: 14 March 2010)

ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data

scientific article

Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4.

scientific article published in April 2012

Reassortment patterns in Swine influenza viruses

article published in 2009

Reassortment patterns in Swine influenza viruses.

scientific article

Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas

scientific article published on 12 January 2014

Signs of the 2009 influenza pandemic in the New York-Presbyterian Hospital electronic health records

scientific article

Somatic CLL mutations occur at multiple distinct hematopoietic maturation stages: documentation and cautionary note regarding cell fraction purity

scientific article published on 5 December 2017

Subclonal NT5C2 mutations are associated with poor outcomes after relapse of pediatric acute lymphoblastic leukemia

scientific article published on 01 March 2020

The Emergence of 2009 H1N1 Pandemic Influenza

The genetics of nodal marginal zone lymphoma

scientific article published on 22 June 2016

The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome

scientific article

Transcriptome reconstruction and annotation of cynomolgus and African green monkey

scientific article

TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer.

scientific article published in June 2019

Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia

scientific article

Viral diversity and clonal evolution from unphased genomic data.

scientific article

List of works by Hossein Khiabanian

A Case of T-cell Acute Lymphoblastic Leukemia Relapsed As Myeloid Acute Leukemia

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

Activating mutations and translocations in the guanine exchange factor VAV1 in peripheral T-cell lymphomas

Activating mutations in the NT5C2 nucleotidase gene drive chemotherapy resistance in relapsed ALL.

All-FIT: allele-frequency-based imputation of tumor purity from high-depth sequencing data

Alterations to the Esophageal Microbiome Associated with Progression from Barrett's Esophagus to Esophageal Adenocarcinoma

Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation

Association of JAK2-V617F Mutations Detected by Solid Tumor Sequencing With Coexistent Myeloproliferative Neoplasms

Barrett's esophagus is associated with a distinct oral microbiome.

Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia

Clinical impact of small subclones harboring NOTCH1, SF3B1 or BIRC3 mutations in chronic lymphocytic leukemia

Clonal evolution mechanisms in NT5C2 mutant-relapsed acute lymphoblastic leukaemia

Complete Regression of Advanced Pancreatic Ductal Adenocarcinomas upon Combined Inhibition of EGFR and C-RAF

Data-driven discovery of seasonally linked diseases from an Electronic Health Records system

De novo transcriptome reconstruction and annotation of the Egyptian rousette bat.

Detection of Three Distinct Clonal Populations Using Circulating Cell Free DNA: A Cautionary Note on the Use of Liquid Biopsy

Detection of clonal hematopoiesis of indeterminate potential in clinical sequencing of solid tumor specimens.

Differences in patient age distribution between influenza A subtypes.

Discovering disease associations by integrating electronic clinical data and medical literature

Emerging Role of Genomic Rearrangements in Breast Cancer: Applying Knowledge from Other Cancers

Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration

Gamma Secretase Inhibition by BMS-906024 Enhances Efficacy of Paclitaxel in Lung Adenocarcinoma

Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness

Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome

Genetics of follicular lymphoma transformation

Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus

High-resolution Genomic Surveillance of 2014 Ebolavirus Using Shared Subclonal Variants

Increasing Dietary Fiber Intake Is Associated with a Distinct Esophageal Microbiome

Inference of Germline Mutational Status and Evaluation of Loss of Heterozygosity in High-Depth, Tumor-Only Sequencing Data

Integrated mutational and cytogenetic analysis identifies new prognostic subgroups in chronic lymphocytic leukemia

Lactobacillus rhamnosus GG probiotic enteric regimen does not appreciably alter the gut microbiome or provide protection against GVHD after allogeneic hematopoietic stem cell transplantation.

Leukaemogenesis induced by an activating β-catenin mutation in osteoblasts

MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications.

Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns

Mutational landscape, clonal evolution patterns, and role of RAS mutations in relapsed acute lymphoblastic leukemia

Mutations of the SF3B1 splicing factor in chronic lymphocytic leukemia: association with progression and fludarabine-refractoriness

On statistical modeling of sequencing noise in high depth data to assess tumor evolution

PHF6 mutations in T-cell acute lymphoblastic leukemia

ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data

Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4.

Reassortment patterns in Swine influenza viruses

Reassortment patterns in Swine influenza viruses.

Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas

Signs of the 2009 influenza pandemic in the New York-Presbyterian Hospital electronic health records

Somatic CLL mutations occur at multiple distinct hematopoietic maturation stages: documentation and cautionary note regarding cell fraction purity

Subclonal NT5C2 mutations are associated with poor outcomes after relapse of pediatric acute lymphoblastic leukemia

The Emergence of 2009 H1N1 Pandemic Influenza

The genetics of nodal marginal zone lymphoma

The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome

Transcriptome reconstruction and annotation of cynomolgus and African green monkey

TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer.

Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia

Viral diversity and clonal evolution from unphased genomic data.