List of works - Tomás Gomes

A cellular census of human lungs identifies novel cell states in health and in asthma

scientific article published on 17 June 2019

An antiviral response beyond immune cells

scientific article published on 01 July 2020

Cross-tissue immune cell analysis reveals tissue-specific adaptations and clonal architecture across the human body

scientific article

Cross-tissue immune cell analysis reveals tissue-specific features in humans

scientific article published on 13 May 2022

Distinct microbial and immune niches of the human colon

scientific article published on 17 February 2020

Distinctive Patterns of Transcription and RNA Processing for Human lincRNAs

scientific article

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

article by Aaron T L Lun et al published 22 March 2019 in Genome Biology

Gene expression variability across cells and species shapes innate immunity

scientific article published in Nature

Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation

Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

scientific article published on 24 October 2018

Immune Cell Dynamics Unfolded by Single-Cell Technologies.

scientific article published on 26 June 2018

Immunology Driven by Large-Scale Single-Cell Sequencing

scientific article published on 20 October 2019

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

scientific article

Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide

scientific article published on 4 February 2016

RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing

scholarly article by Takayuki Nojima published in October 2018

Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation

scientific article published on 01 March 2020

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease

scientific article published on 01 December 2020

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation

scholarly article by Ricardo J Miragaia et al published 19 February 2019 in Immunity

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development

scientific article published on 12 January 2018

Tumor necrosis factor receptor family costimulation increases regulatory T-cell activation and function via NF-κB

scientific article published on 03 February 2020

List of works by Tomás Gomes

A cellular census of human lungs identifies novel cell states in health and in asthma

An antiviral response beyond immune cells

Cross-tissue immune cell analysis reveals tissue-specific adaptations and clonal architecture across the human body

Cross-tissue immune cell analysis reveals tissue-specific features in humans

Distinct microbial and immune niches of the human colon

Distinctive Patterns of Transcription and RNA Processing for Human lincRNAs

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Gene expression variability across cells and species shapes innate immunity

Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation

Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

Immune Cell Dynamics Unfolded by Single-Cell Technologies.

Immunology Driven by Large-Scale Single-Cell Sequencing

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide

RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing

Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development

Tumor necrosis factor receptor family costimulation increases regulatory T-cell activation and function via NF-κB