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List of works by Stephen K Burley

1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum

scientific article published on 8 October 2012

1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

scientific article

2.1 A resolution refined structure of a TATA box-binding protein (TBP)

scientific article

<scp>PDB</scp>‐101: Educational resources supporting molecular explorations through biology and medicine

scientific article published in 2021

A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase.

scientific article published on 26 October 2004

A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure

scientific article

A public-private partnership to unlock the untargeted kinome

scientific article published in January 2013

A standard reference frame for the description of nucleic acid base-pair geometry.

scientific article

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Anti-cooperative biphasic equilibrium binding of transcription factor upstream stimulatory factor to its cognate DNA monitored by protein fluorescence changes

scientific article published on 01 August 1995

Antigelling and antisickling bisphenyl oligopeptides and peptide analogues have similar structural features

scientific article published on 01 August 1987

Architectural transcription factors: proteins that remodel DNA.

scientific article published on March 1997

Atomic structure of the nuclear pore complex targeting domain of a nup116 homologue from the yeast, Candida glabrata

scientific article

Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.

scientific article published on January 1998

Biochemistry and structural biology of transcription factor IID (TFIID)

scientific article (publication date: 1996)

Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins

scientific article

Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2.

scientific article published in July 2009

Catalytic Mechanism and Three-Dimensional Structure of Adenine Deaminase, ⬇️

scientific article published on February 4, 2011

Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy.

scientific article

Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein

scientific article

Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution

scientific article

Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5

scientific article

Cocrystal Structures of Diaminopimelate Decarboxylase

Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives

scientific article published on 30 May 2018

Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production.

scientific article published in September 2014

Crystal structure of TFIID TATA-box binding protein

scientific article (publication date: 5 November 1992)

Crystal structure of a TFIIB-TBP-TATA-element ternary complex

scientific article

Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii

scientific article

Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis.

scientific article published on June 2006

Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae

scientific article

Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit

scientific article published on 01 November 2006

Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires"

scientific article published on 01 September 2006

Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain

scientific article

Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications

scientific article

Crystal structures of two putative phosphoheptose isomerases.

scientific article published on June 2006

D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions

scientific article

DCC: a Swiss army knife for structure factor analysis and validation

scientific article

Deposit3D: a tool for automating structure depositions to the Protein Data Bank

scientific article

Divergent evolution of ligand binding in the o-succinylbenzoate synthase family

scientific article published on 09 October 2013

Engaging the ribosome: universal IFs of translation.

scientific article published in December 2001

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Eukaryotic transcription factor-DNA complexes.

scientific article

Evolution of Enzymatic Activities in the Enolase Superfamily: Stereochemically Distinct Mechanisms in Two Families of cis , cis -Muconate Lactonizing Enzymes † ‡

scientific article

Exploration of disorder in protein structures by X-ray restrained molecular dynamics

article

Forward to the Fundamentals ⬇️

scientific article published on 01 January 1994

Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate

scientific article

Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD

scientific article published on 01 July 2011

HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria

scientific article

Hepatocyte nuclear factor 3/fork head or "winged helix" proteins: a family of transcription factors of diverse biologic function

scientific article published on November 1993

Hierarchical phosphorylation of the translation inhibitor 4E-BP1

scientific article

High-performance macromolecular data delivery and visualization for the web

scientific article published on 26 November 2020

High-performance macromolecular data delivery and visualization for the web. Corrigendum

scientific article published on 01 January 2021

Histone-like transcription factors in eukaryotes

scientific article published on 01 February 1997

Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase

scientific article published on 9 April 2015

Impact of genetic variation on three dimensional structure and function of proteins

scientific article

Insights from 20 years of the Molecule of the Month

scientific article published on 17 June 2020

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank

scientific article

Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex

scientific article

Leucine aminopeptidase: bestatin inhibition and a model for enzyme-catalyzed peptide hydrolysis

scientific article

Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination.

scientific article

Meeting the challenges of drug discovery: a multidisciplinary re-evaluation of current practices. Keystone Symposium 'Meeting the Challenges of Drug Discovery', Vancouver, Canada, 15-19 January 2005

scientific article

ModBase, a database of annotated comparative protein structure models, and associated resources

scientific article

Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences.

scientific article published in November 1994

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

scientific article

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

scientific article (publication date: March 2017)

Outcome of a workshop on applications of protein models in biomedical research

scientific article (publication date: 13 February 2009)

Outcome of a workshop on archiving structural models of biological macromolecules

scientific article

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

scientific article published on 18 June 2015

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

scientific article

Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach

PCD/DCoH: more than a second molecular saddle.

scientific article published on June 1995

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

scientific article published in 2024

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models

scientific article

PDB40: The Protein Data Bank celebrates its 40th birthday

scientific article published in March 2013

Pa0148 from Pseudomonas aeruginosa Catalyzes the Deamination of Adenine ⬇️

scientific article published on July 6, 2011

Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein

scientific article published in January 2003

Picking up the TAB

scientific article published in Nature

Plus ça change, plus c'est la même chose

scientific article published on 01 April 1994

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

scientific article

Protein production and purification

scientific article

Protein production from the structural genomics perspective: achievements and future needs.

scientific article

Protein-nucleic acid interactions

scientific article published on 01 February 1997

Protein-nucleic acid interactions

scientific article published on 01 February 2000

Quaternary structure evaluation tool for protein assemblies

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

scientific article published on 16 September 2020

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

scientific article published on 29 November 2019

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

scientific article published on 25 October 2017

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

article

RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures

scientific article published in 2024

RNA chiropractics

scientific article published on 01 March 1998

RNA polymerase II transcription initiation: a structural view

scientific article

Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo.

scientific article published on October 1996

Rapid-access, high-throughput synchrotron crystallography for drug discovery ⬇️

scientific article published on April 18, 2012

Re-refinement of the X-ray crystal structure of bovine lens leucine aminopeptidase complexed with bestatin

scientific article published on 01 April 1993

Recognition of polyadenylate RNA by the poly(A)-binding protein

scientific article

Rel revealed: cocrystal structures of the NF-kappa B p50 homodimer.

scientific article published on February 1995

Response to On prompt update of literature references in the Protein Data Bank

scientific article published on 30 September 2014

SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib.

scholarly article

SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo

scientific article

Safeguarding the integrity of protein archive

scientific article published on January 2010

Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome

scientific article

She2p Is a Novel RNA Binding Protein with a Basic Helical Hairpin Motif

article

Structural Basis for the Divergence of Substrate Specificity and Biological Function within HAD Phosphatases in Lipopolysaccharide and Sialic Acid Biosynthesis

scientific article

Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR ⬇️

scientific article published on November 10, 2010

Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics

scientific article

Structural and Functional Studies of Fatty Acyl Adenylate Ligases from E. coli and L. pneumophila

scientific article

Structural aspects of interactions within the Myc/Max/Mad network.

scientific article

Structural bases for CRMP function in plexin-dependent semaphorin3A signaling

scientific article

Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation

scientific article

Structural basis for a ribofuranosyl binding protein: Insights into the furanose specific transport ⬇️

scientific article published on February 14, 2011

Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase

scientific article

Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2alpha protein kinase GCN2.

scientific article

Structural biology of eIF4F: mRNA recognition and preparation in eukaryotic translation initiation.

scientific article

Structural genomics

scientific article published on 01 January 2003

Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis

scientific article

Structural genomics: A pipeline for providing structures for the biologist

scientific article

Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase

scientific article published in January 2012

Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum.

scientific article published on 13 September 2011

Structure and function of the b/HLH/Z domain of USF

scientific article

Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin.

scientific article

Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein

scientific article

Structure of a periplasmic glucose-binding protein from Thermotoga maritima

scientific article

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 Å resolution

scientific article

Structure of cyclo(-L-prolylglycyl-)2 trihydrate

scientific article published on 01 December 1989

Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex

scientific article

Structure of the Baculovirus nucleocapsid

scientific article published on 01 July 1982

Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex

scientific article

Structure of the pseudouridine synthase RsuA from Haemophilus influenzae.

scientific article

Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding

scientific article

Structure, Dynamics, Evolution, and Function of a Major Scaffold Component in the Nuclear Pore Complex

scientific article

Structure-function studies on positions 17, 18, and 21 replacement analogues of glucagon: the importance of charged residues and salt bridges in glucagon biological activity

scientific article

Structures of PHR Domains from Mus musculus Phr1 (Mycbp2) Explain the Loss-of-Function Mutation (Gly1092→Glu) of the C. elegans Ortholog RPM-1

scientific article

Structures of the autoproteolytic domain from theSaccharomyces cerevisiaenuclear pore complex component, Nup145

scientific article

Structuring the universe of proteins.

scientific article

TATA box mimicry by TFIID: autoinhibition of pol II transcription

scientific article published on 01 September 1998

TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

scientific article (publication date: 23 February 2017)

Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies

scientific article published on 14 February 2009

The Hunt for 8-Oxoguanine Deaminase

scientific article

The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology

scientific article

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

scientific article

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

scientific article

The TATA box binding protein.

scientific article published on February 1996

The archiving and dissemination of biological structure data

scientific article

The catalase activity of diiron adenine deaminase ⬇️

scientific article published on November 9, 2011

The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6

scientific article

The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets

scientific article

The kinetic mechanism of phosphomevalonate kinase.

scientific article published on 6 November 2002

The semidominant Mi(b) mutation identifies a role for the HLH domain in DNA binding in addition to its role in protein dimerization

scientific article published in November 1996

The structure of an unusual ordered aggregate of papaya mosaic virus protein.

scientific article published in April 1982

The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain

scientific article published on May 2000

Thermodynamic analysis of the interaction between YY1 and the AAV P5 promoter initiator element

scientific article published on 01 February 2001

Transcription factor complexes.

scientific article

Transcription factors. DNA recognition, warts and all

scientific article published on October 8, 1992

Translational repression by a novel partner of human poly(A) binding protein, Paip2

scientific article

Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1.

scientific article

Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin

scientific article

UPF201 Archaeal Specific Family Members Reveal Structural Similarity to RNA-Binding Proteins but Low Likelihood for RNA-Binding Function

scientific article

Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity

scientific article

Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2

scientific article

Universal translation initiation factor IF2/eIF5B.

scientific article

Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies

scientific article published on 01 May 1994

Using the Tools and Resources of the RCSB Protein Data Bank.

scientific article

Validation of Structures in the Protein Data Bank

scientific article published on 21 November 2017

Virtual Boot Camp: COVID-19 evolution and structural biology

scientific article published on 14 August 2020

Weakly polar interactions in proteins.

scientific article published on January 1988

Weight-reducing effects of the plasma protein encoded by the obese gene

scientific article

Winged helix proteins

scientific article (publication date: February 2000)

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

scientific article published on 7 February 2018

X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding

scientific article

X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus

scientific article

X-ray crystallographic studies of eukaryotic transcription factors

scientific article published on 01 January 1993

X-ray crystallographic studies of eukaryotic transcription factors.

scientific article

X-ray crystallographic studies of eukaryotic transcription initiation factors.

scientific article

X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1)

scientific article

X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing.

scientific article published on January 2005

X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus

scientific article

X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution

scientific article

X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein

scientific article

X-ray structure of translation initiation factor eIF2gamma: implications for tRNA and eIF2alpha binding

scientific article

X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors

scientific article

X-ray structures of threonine aldolase complexes: structural basis of substrate recognition

scientific article

X-ray studies of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP

scientific article published on 01 January 1997

[10] Dynamic light scattering in evaluating crystallizability of macromolecules.

scientific article

p53: a cellular Achilles' heel revealed.

scientific article published on September 1994

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