List of works - Benoit Ballester

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

scientific article

A map of direct TF-DNA interactions in the human genome

article by Marius Gheorghe et al published 28 February 2019 in Nucleic Acids Research

A map of direct TF-DNA interactions in the human genome

A predictable conserved DNA base composition signature defines human core DNA replication origins

scientific article published on 21 September 2020

Author Correction: Involvement of G-quadruplex regions in mammalian replication origin activity

scientific article published on 11 June 2020

BioMart Central Portal--unified access to biological data

scientific article

BioMart--biological queries made easy

scientific article (publication date: 14 January 2009)

Consistent annotation of gene expression arrays

scientific article

Ensembl 2007

scientific article

Ensembl 2008

scientific article

Ensembl's 10th year

scientific article

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

scientific article

Gene expression profiling identifies molecular subgroups among nodal peripheral T-cell lymphomas.

scientific article published on March 2006

Gene profiling reveals specific oncogenic mechanisms and signaling pathways in oncocytic and papillary thyroid carcinoma.

scientific article published in June 2005

High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq.

scientific article

Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape

scientific article

Involvement of G-quadruplex regions in mammalian replication origin activity

scientific article published on 22 July 2019

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

scientific article

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

scientific article published in 2021

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

scientific article

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

scientific article published on 8 November 2017

ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments

scientific article published on 01 January 2022

Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues

scientific article

TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation.

scientific article

The Sgp3 locus on mouse chromosome 13 regulates nephritogenic gp70 autoantigen expression and predisposes to autoimmunity.

scientific article published on October 2003

The chromatin environment shapes DNA replication origin organization and defines origin classes

scientific article published on 11 November 2015

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages.

scientific article published in February 2012

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

scientific article (publication date: 20 January 2012)

List of works by Benoit Ballester

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

A map of direct TF-DNA interactions in the human genome

A map of direct TF-DNA interactions in the human genome

A predictable conserved DNA base composition signature defines human core DNA replication origins

Author Correction: Involvement of G-quadruplex regions in mammalian replication origin activity

BioMart Central Portal--unified access to biological data

BioMart--biological queries made easy

Consistent annotation of gene expression arrays

Ensembl 2007

Ensembl 2008

Ensembl's 10th year

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

Gene expression profiling identifies molecular subgroups among nodal peripheral T-cell lymphomas.

Gene profiling reveals specific oncogenic mechanisms and signaling pathways in oncocytic and papillary thyroid carcinoma.

High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq.

Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape

Involvement of G-quadruplex regions in mammalian replication origin activity

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments

Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues

TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation.

The Sgp3 locus on mouse chromosome 13 regulates nephritogenic gp70 autoantigen expression and predisposes to autoimmunity.

The chromatin environment shapes DNA replication origin organization and defines origin classes

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages.

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages