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List of works by Michael Gribskov

2HAPI: a microarray data analysis system.

scientific article

A Search for Parent-of-Origin Effects on Honey Bee Gene Expression

scientific article published on 5 June 2015

A comparison of the crystal structures of bacterial l-asparaginases

A physical interaction network of dengue virus and human proteins

scientific article

A rice kinase-protein interaction map

article

Accurate Classification of RNA Structures Using Topological Fingerprints

scientific article

An integrated Arabidopsis annotation database for Affymetrix Genechip data analysis, and tools for regulatory motif searches.

scientific article

An open forum for computational biology

scientific article

Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo

scientific article (publication date: 2011)

Analysis of the structure of chemically synthesized HIV-1 protease complexed with a hexapeptide inhibitor. Part I: Crystallographic refinement of 2 A data.

scientific article published on February 1997

AptRank: an adaptive PageRank model for protein function prediction on   bi-relational graphs

scientific article published on 14 February 2017

Arabidopsis proteins containing similarity to the universal stress protein domain of bacteria.

scientific article published in March 2003

Bioinformatics research in the Asia Pacific: a 2007 update

scientific article

CDPKs - a kinase for every Ca2+ signal?

scientific article

Calcium-Dependent Protein Kinases from Arabidopsis Show Substrate Specificity Differences in an Analysis of 103 Substrates ⬇️

scientific article published on August 30, 2011

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data.

scientific article

Challenges in data management for functional genomics

scientific article

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq

scientific article published on 10 February 2020

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis

scientific article

DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates

scientific article published on 8 June 2017

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

scientific article

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

article

Effect of high-fat diet on secreted milk transcriptome in midlactation mice.

scientific article published in November 2017

Establishing bioinformatics research in the Asia Pacific

article

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores

article

Examining the architecture of cellular computing through a comparative study with a computer.

scientific article published on June 2005

Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice

scientific article published in June 2003

INTEGRATION OF STRUCTURAL AND SEQUENCE INFORMATION FOR HOMOLOGY-BASED MODELING OF PROTEINS

IRESpy: an XGBoost model for prediction of internal ribosome entry sites

scientific article published on 30 July 2019

MODULEWRITER: a program for automatic generation of database interfaces.

scientific article published in May 2003

Making models match measurements: model optimization for morphogen patterning networks

scientific article

Metabolite Profiles in Starved Diporeia spp. Using Liquid Chromatography-Mass Spectrometry (LC-MS) Based Metabolomics

scientific article published in 2012

MiPepid: MicroPeptide identification tool using machine learning

scientific article published on 08 November 2019

Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss

scientific article

Overexpression and purification of the sigma subunit of Escherichia coli RNA polymerase

scientific article published on 01 December 1983

Pattern Matching in RNA Structures

Predicting N-terminal myristoylation sites in plant proteins

scientific article

Profile analysis

scientific article published in January 1990

Profile analysis

scientific article published in January 1994

Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice

scientific article published in 2006

Protein-protein interactions of tandem affinity purified protein kinases from rice

scientific article

Spontaneous symmetry breaking in genome evolution.

scientific article published on 26 March 2008

The Arabidopsis CDPK-SnRK superfamily of protein kinases.

scientific article

The ISCB: Growing and Evolving in Step with Science

scientific article

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The emerging world of wikis

scientific article

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

scientific article

The language metaphor in sequence analysis

The new biological literature

scientific article published on 01 May 1999

The protein kinase resource

scientific article (publication date: November 1997)

The role of RNA sequence and structure in RNA--protein interactions.

scientific article

The sigma 70 family: sequence conservation and evolutionary relationships ⬇️

scientific article published on June 1, 1992

Translational initiation factors IF-1 and eIF-2α share an RNA-binding motif with prokaryotic ribosomal protein S1 and polynucleotide phosphorylase

scientific article published on 01 September 1992

Use of controlled terminology hierarchies to detect common characteristics of genes within expression clusters

article

Wiggle-predicting functionally flexible regions from primary sequence

scientific article published on 5 June 2006

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