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List of works by Manuel Ares

A handful of intron-containing genes produces the lion's share of yeast mRNA.

scientific article published in September 1999

A high-throughput splicing assay identifies new classes of inhibitors of human and yeast spliceosomes

scientific article

A yeast intronic splicing enhancer and Nam8p are required for Mer1p-activated splicing.

scientific article

ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA ⬇️

scientific article published on November 10, 2003

Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy.

scientific article

Alternative splicing variability: exactly how similar are two identical cells? ⬇️

scientific article published on 05 July 2011

Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation.

scientific article published on 11 October 2017

Bacterial RNA Isolation ⬇️

scientific article published on September 1, 2012

Basic quantitative polymerase chain reaction using real-time fluorescence measurements.

scientific article

Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays.

scientific article published on February 2006

Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo ⬇️

scientific article published on September 1, 1998

Coffee with Ribohipster

scientific article published on April 2015

Competencies: A Cure for Pre-Med Curriculum

scientific article published on 01 November 2011

Context-dependent control of alternative splicing by RNA-binding proteins

scientific article (publication date: October 2014)

Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction

scientific article published on 20 May 2019

Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA ⬇️

scientific article published on July 1, 1998

Detection and measurement of alternative splicing using splicing-sensitive microarrays.

scientific article published in December 2005

Determining the yield and quality of purified RNA.

scientific article

Ethanol precipitation of RNA and the use of carriers.

scientific article published in June 2010

Exploring functional relationships between components of the gene expression machinery.

scientific article published on 30 January 2005

Fragmentation of whole-transcriptome RNA using E. coli RNase III.

scientific article

Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA

scientific article

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 06 April 2020

Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing.

scientific article published on 4 April 2013

Guidelines for the use of RNA purification kits.

scientific article published on July 2010

High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates.

scientific article published on November 2013

Human genes for U2 small nuclear RNA map to a major adenovirus 12 modification site on chromosome 17.

scientific article

Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae

scientific article published in December 2010

Integrative Genome-wide Analysis Reveals Cooperative Regulation of Alternative Splicing by hnRNP Proteins ⬇️

scientific article published on February 23, 2012

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations ⬇️

scientific article published on 20 May 2015

Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA ⬇️

scientific article published on November 11, 1997

Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

scientific article

Knowledge-based analysis of microarray gene expression data by using support vector machines

scientific article

Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p.

scientific article published on 18 February 2004

Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p.

scientific article published on 29 March 2006

Methods for processing high-throughput RNA sequencing data.

scientific article

Methods for processing microarray data.

scientific article

Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy

scientific article

Nondenaturing agarose gel electrophoresis of RNA.

scientific article published in June 2010

Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae.

scientific article published on August 2003

Polyacrylamide gel electrophoresis of RNA.

scientific article published in June 2010

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 15 April 2020

Purification of RNA by SDS solubilization and phenol extraction.

scientific article published in June 2010

Purification of RNA using TRIzol (TRI reagent).

scientific article published in June 2010

Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression

scientific article

RBPmap: a web server for mapping binding sites of RNA-binding proteins

scientific article

RNA-binding protein CPEB1 remodels host and viral RNA landscapes

scientific article published on 24 October 2016

RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site

scientific article (publication date: 5 April 1996)

Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome

scientific article published on 22 August 2019

Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD)

scientific journal article

Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicing

scientific article

Removal of DNA from RNA.

scientific article

Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing

scientific article

SMITten by the Speed of Splicing.

scientific article published in April 2016

Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).

scientific article published on 18 October 2013

Sam68 regulates a set of alternatively spliced exons during neurogenesis

scientific article

Scanning microarray slides.

scientific article published in February 2014

Sing the genome electric: excited cells adjust their splicing.

scientific article

Structural Analysis of the Quaking Homodimerization Interface ⬇️

scientific article published on September 11, 2012

Stuttering against marginotomy.

scientific article published in January 2008

The UCSC SARS-CoV-2 Genome Browser

scientific article published on 09 September 2020

The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain ⬇️

scientific article published on May 29, 2011

Tips on hybridizing, washing, and scanning affymetrix microarrays.

scientific article published in February 2014

Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay

scientific article published on March 2007

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