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List of works by Andrew J Leigh Brown

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

scientific article published on 19 September 2016

A High HIV-1 Strain Variability in London, UK, Revealed by Full-Genome Analysis: Results from the ICONIC Project

article

A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project

scientific article published in February 2018

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

scientific article published on 29 May 2008

Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus

scientific article (publication date: March 2007)

Adaptation to different human populations by HIV-1 revealed by codon-based analyses

scientific article published on 23 June 2006

Adaptation to different human populations by HIV-1 revealed by codon-based analysis

article

An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1

scientific article

Analysis of the history and spread of HIV-1 in Uganda using phylodynamics

scientific article

Association of antiretroviral resistance genotypes with response to therapy--comparison of three models

scientific article published on 01 September 2002

Automated analysis of phylogenetic clusters

scientific article

Completing the molecular investigation into the HIV outbreak at Glenochil prison

article

Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data

scientific article

Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico.

scientific article

Differences in HIV-1 pol Sequences From Female Genital Tract and Blood During Antiretroviral Therapy ⬇️

scientific article published on September 1, 2003

Dynamics of the emergence and establishment of a newly dominant genotype of Japanese encephalitis virus throughout Asia

scientific article published on 05 February 2014

Early evolutionary origin of the planktic foraminifera inferred from small subunit rDNA sequence comparisons.

scientific article published on December 1996

Employing phylogenetic tree shape statistics to resolve the underlying host population structure

scientific article published on 10 November 2021

Episodic sexual transmission of HIV revealed by molecular phylodynamics

scientific article

Escape from collective denial: HIV transmission during surgery

scientific article

Estimating reassortment rates in co-circulating Eurasian swine influenza viruses

scientific article published on 12 September 2012

Estimating selection pressures on HIV-1 using phylogenetic likelihood models.

scientific article published on October 2008

Estimating the rate of intersubtype recombination in early HIV-1 group M strains

scientific article published on 12 December 2012

Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy.

scientific article

Evolutionary Biology of Human Immunodeficiency Virus

scholarly article by A J Leigh Brown & E C Holmes published November 1994 in Annual Review of Ecology, Evolution, and Systematics

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.

scientific article

Evolutionary relationships of the human immunodeficiency viruses

scientific article published on 01 June 1990

Genetic basis of hypersusceptibility to protease inhibitors and low replicative capacity of human immunodeficiency virus type 1 strains in primary infection

scientific article published on March 2004

Genetic basis of variation in tenofovir drug susceptibility in HIV-1.

scientific article published in June 2008

HIV phylogenetics

scientific article published on September 2007

HIV-1 DNA Is Maintained in Antigen-Specific CD4+ T Cell Subsets in Patients on Long-Term Antiretroviral Therapy Regardless of Recurrent Antigen Exposure

article

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences

scientific article published on 25 May 2017

HIV-TRACE (Transmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens

scientific article published on 31 January 2018

Heterogeneous clearance rates of long-lived lymphocytes infected with HIV: intrinsic stability predicts lifelong persistence

scholarly article

Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains

scientific article published on January 2005

Human macrophages accumulate HIV-1 particles in MHC II compartments

scientific article (publication date: October 2002)

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

article

Intercontinental dispersal of HIV-1 subtype B associated with transmission among men who have sex with men in Japan

scientific article

Method used to identify previously undiagnosed infections in the HIV outbreak at Glenochil prison

scientific article published on 01 October 1999

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

scientific article

Molecular phylogeny of the planktic foraminifera

scholarly article by K. F. Darling et al published 1 October 1996 in The Journal of Foraminiferal Research

Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data

article

Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D

scientific article (publication date: 2014)

Origin and fate of A/H1N1 influenza in Scotland during 2009

scientific article

PANGEA-HIV: phylogenetics for generalised epidemics in Africa

scientific article published on March 2015

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

scientific article published on 01 January 2020

Phenotypic hypersusceptibility to multiple protease inhibitors and low replicative capacity in patients who are chronically infected with human immunodeficiency virus type 1.

scientific article

Phylodynamics of infectious disease epidemics

scientific article

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions

scientific article

Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest?

scientific article

Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations

scientific article published in Scientific Reports

Phylogeography of Japanese encephalitis virus: genotype is associated with climate

scientific article

Planktic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa

Protecting HIV databases

Quantifying predictors for the spatial diffusion of avian influenza virus in China

scientific article

Reassortment patterns of avian influenza virus internal segments among different subtypes.

scientific article published on 24 January 2014

Recent and Rapid Transmission of HIV among People who Inject Drugs in Scotland Revealed through Phylogenetic Analysis.

scientific article published on 13 March 2018

Reconstructing the HIV-1 CRF02_AG and CRF06_cpx epidemics in Burkina Faso and West Africa using early samples

scientific article published on 5 April 2016

Sequence data as evidence

scientific article published in Nature

Sero-prevalence and incidence of A/H1N1 2009 influenza infection in Scotland in winter 2009-2010

scientific article

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection

scientific article

The Diversity and Distribution of Modern Planktic Foraminiferal Small Subunit Ribosomal RNA Genotypes and their Potential as Tracers of Present and Past Ocean Circulations

The HIV Epidemic: High-Income Countries ⬇️

scientific article published on May 1, 2012

The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda

scientific article published on 10 November 2020

The contribution of viral genotype to plasma viral set-point in HIV infection

scientific article

The evolutionary dynamics of influenza A virus adaptation to mammalian hosts.

scientific article published on 04 February 2013

The global transmission network of HIV-1

scientific article

Time trends in drug resistant HIV-1 infections in the United Kingdom up to 2009: multicentre observational study ⬇️

scientific article (publication date: 21 August 2012)

Transmission fitness of drug-resistant human immunodeficiency virus and the prevalence of resistance in the antiretroviral-treated population

scientific article published on 29 January 2003

Transmission network parameters estimated from HIV sequences for a nationwide epidemic

scientific article

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

scientific article published on 23 December 2015

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

scientific article

Viral dynamics during structured treatment interruptions of chronic human immunodeficiency virus type 1 infection

scientific article

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