List of works - Francisco S Domingues

A Web Resource for Levodopa-Induced Dyskinesia Genetics in Parkinson's Disease

scientific article published on 17 April 2017

A network-based meta-analysis for characterizing the genetic landscape of human aging

scientific article published on 21 December 2017

A new measure for functional similarity of gene products based on Gene Ontology

scientific article published on 15 June 2006

Alignment of non-covalent interactions at protein-protein interfaces.

scientific article

Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage

scientific article

Analyzing and visualizing residue networks of protein structures

scientific article published on 21 February 2011

Automated clustering of ensembles of alternative models in protein structure databases.

scientific article

Comparative analysis of protein structure alignments

scientific article

Computational assessment of feature combinations for pathogenic variant prediction.

scientific article published on 14 March 2016

Dintor: functional annotation of genomic and proteomic data.

scientific article published on 21 December 2015

Exploring Approaches for Detecting Protein Functional Similarity within an Orthology-based Framework

scientific article published on 23 March 2017

Exploring digenic inheritance in arrhythmogenic cardiomyopathy

scientific article published on 8 December 2017

FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees.

scientific article

GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

scientific article published on January 2007

Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations

scientific article

HDAC Inhibition Improves the Sarcoendoplasmic Reticulum Ca2+-ATPase Activity in Cardiac Myocytes.

scientific article published on 31 January 2018

Identification of HNRNPK as regulator of hepatitis C virus particle production

scientific article

Identification of mammalian orthologs associates PYPAF5 with distinct functional roles

scientific article

Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity.

scientific article

Importance of different types of prior knowledge in selecting genome-wide findings for follow-up

scientific article published on February 2013

Integrative visual analysis of protein sequence mutations.

scientific article published on 28 August 2014

Ketoamide resistance and hepatitis C virus fitness in val55 variants of the NS3 serine protease

scientific article published on 17 January 2012

Local function conservation in sequence and structure space

scientific article

Moment invariants as shape recognition technique for comparing protein binding sites.

scientific article

NOXclass: prediction of protein-protein interaction types

scientific article

Overexpression of blood microRNAs 103a, 30b, and 29a in L-dopa-treated patients with PD.

scientific article published on 16 January 2015

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

scientific article published on 19 October 2009

Predicting interactions between T cell receptors and MHC-peptide complexes ⬇️

scientific article published on November 23, 2010

Profiling of Parkin-binding partners using tandem affinity purification

scientific article

SNP prioritization using a Bayesian probability of association

scientific article published on 26 December 2012

Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility

scientific article published on 5 October 2008

Seventy-five genetic loci influencing the human red blood cell

scientific article published on 5 December 2012

Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage

scientific article

Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2.

scientific article published on November 2003

Structural studies on FAP fibrils: removal of contaminants is essential for the interpretation of X-ray data

Sustained performance of knowledge-based potentials in fold recognition.

scientific article

The role of protein structure in genomics.

scientific article published in June 2000

Topological analysis and interactive visualization of biological networks and protein structures

scientific article

WILMA-automated annotation of protein sequences.

scientific article published on January 2004

List of works by Francisco S Domingues

A Web Resource for Levodopa-Induced Dyskinesia Genetics in Parkinson's Disease

A network-based meta-analysis for characterizing the genetic landscape of human aging

A new measure for functional similarity of gene products based on Gene Ontology

Alignment of non-covalent interactions at protein-protein interfaces.

Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage

Analyzing and visualizing residue networks of protein structures

Automated clustering of ensembles of alternative models in protein structure databases.

Comparative analysis of protein structure alignments

Computational assessment of feature combinations for pathogenic variant prediction.

Dintor: functional annotation of genomic and proteomic data.

Exploring Approaches for Detecting Protein Functional Similarity within an Orthology-based Framework

Exploring digenic inheritance in arrhythmogenic cardiomyopathy

FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees.

GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations

HDAC Inhibition Improves the Sarcoendoplasmic Reticulum Ca2+-ATPase Activity in Cardiac Myocytes.

Identification of HNRNPK as regulator of hepatitis C virus particle production

Identification of mammalian orthologs associates PYPAF5 with distinct functional roles

Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity.

Importance of different types of prior knowledge in selecting genome-wide findings for follow-up

Integrative visual analysis of protein sequence mutations.

Ketoamide resistance and hepatitis C virus fitness in val55 variants of the NS3 serine protease

Local function conservation in sequence and structure space

Moment invariants as shape recognition technique for comparing protein binding sites.

NOXclass: prediction of protein-protein interaction types

Overexpression of blood microRNAs 103a, 30b, and 29a in L-dopa-treated patients with PD.

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

Predicting interactions between T cell receptors and MHC-peptide complexes ⬇️

Profiling of Parkin-binding partners using tandem affinity purification

SNP prioritization using a Bayesian probability of association

Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility

Seventy-five genetic loci influencing the human red blood cell

Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage

Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2.

Structural studies on FAP fibrils: removal of contaminants is essential for the interpretation of X-ray data

Sustained performance of knowledge-based potentials in fold recognition.

The role of protein structure in genomics.

Topological analysis and interactive visualization of biological networks and protein structures

WILMA-automated annotation of protein sequences.