List of works - Jan Kosiński

A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation ⬇️

scientific article published on January 1, 2003

A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering

scientific article published in July 2007

A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex

scientific article

AlphaPulldown—a python package for protein–protein interaction screens using AlphaFold-Multimer

scientific article published in 2022

Analysis of the quaternary structure of the MutL C-terminal domain

scientific article published in August 2005

Architecture of the yeast Elongator complex

scientific article (publication date: February 2017)

Automated structure modeling of large protein assemblies using crosslinks as distance restraints

scientific article

FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.

scientific article published in January 2005

From the resolution revolution to evolution: structural insights into the evolutionary relationships between vesicle coats and the nuclear pore

scientific article published on 11 August 2018

Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle.

scientific article published on 06 June 2016

Identification of Lynch syndrome mutations in the MLH1-PMS2 interface that disturb dimerization and mismatch repair

scientific article published in August 2010

Identifying an interaction site between MutH and the C-terminal domain of MutL by crosslinking, affinity purification, chemical coding and mass spectrometry

scientific article published on 13 June 2006

Improving your target-template alignment with MODalign

scientific article (publication date: April 2012)

In situ architecture of the algal nuclear pore complex.

scientific article

In situ structural analysis of the human nuclear pore complex

scientific article

In-cell architecture of the nuclear pore and snapshots of its turnover

scientific article published on 02 September 2020

Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains

scientific article published on 16 December 2015

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

scientific article (publication date: April 2013)

Molecular architecture of the inner ring scaffold of the human nuclear pore complex

scientific article

Molecular basis of tRNA recognition by the Elongator complex

scientific article published on 10 July 2019

Molecular structures of unbound and transcribing RNA polymerase III.

scientific article published on 25 November 2015

Novel protein fold discovered in the PabI family of restriction enzymes

scientific article published in 2007

Phylogenetic analysis of haloalkane dehalogenases

scientific article published in May 2007

Physiological truncation and domain organization of a novel uracil-DNA-degrading factor

scientific article published in February 2010

Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.

scientific article published in December 2004

Specialization versus conservation: How Pol I and Pol III use the conserved architecture of the pre-initiation complex for specialized transcription

scientific article published on 21 June 2016

Structural insights into transcription initiation by yeast RNA polymerase I.

scientific article published on 24 July 2017

Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze Protein

scientific article

Structure of Prototypic Peptide Transporter DtpA from E. coli in Complex with Valganciclovir Provides Insights into Drug Binding of Human PepT1

scientific article published on 31 January 2019

Structure of the TFIIIC subcomplex τA provides insights into RNA polymerase III pre-initiation complex formation

scientific article published on 30 September 2020

Systematic analysis of protein turnover in primary cells.

scientific article published on 15 February 2018

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

scientific article published on 12 July 2005

The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family

scientific article published on 28 June 2008

Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures

scientific article published on 7 February 2015

List of works by Jan Kosiński

A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation ⬇️

A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering

A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex

AlphaPulldown—a python package for protein–protein interaction screens using AlphaFold-Multimer

Analysis of the quaternary structure of the MutL C-terminal domain

Architecture of the yeast Elongator complex

Automated structure modeling of large protein assemblies using crosslinks as distance restraints

FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.

From the resolution revolution to evolution: structural insights into the evolutionary relationships between vesicle coats and the nuclear pore

Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle.

Identification of Lynch syndrome mutations in the MLH1-PMS2 interface that disturb dimerization and mismatch repair

Identifying an interaction site between MutH and the C-terminal domain of MutL by crosslinking, affinity purification, chemical coding and mass spectrometry

Improving your target-template alignment with MODalign

In situ architecture of the algal nuclear pore complex.

In situ structural analysis of the human nuclear pore complex

In-cell architecture of the nuclear pore and snapshots of its turnover

Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

Molecular architecture of the inner ring scaffold of the human nuclear pore complex

Molecular basis of tRNA recognition by the Elongator complex

Molecular structures of unbound and transcribing RNA polymerase III.

Novel protein fold discovered in the PabI family of restriction enzymes

Phylogenetic analysis of haloalkane dehalogenases

Physiological truncation and domain organization of a novel uracil-DNA-degrading factor

Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.

Specialization versus conservation: How Pol I and Pol III use the conserved architecture of the pre-initiation complex for specialized transcription

Structural insights into transcription initiation by yeast RNA polymerase I.

Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze Protein

Structure of Prototypic Peptide Transporter DtpA from E. coli in Complex with Valganciclovir Provides Insights into Drug Binding of Human PepT1

Structure of the TFIIIC subcomplex τA provides insights into RNA polymerase III pre-initiation complex formation

Systematic analysis of protein turnover in primary cells.

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family

Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures