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List of works by Maciej Antczak

A Survey on Online Judge Systems and Their Applications

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches

scientific article

Automated 3D structure composition for large RNAs

scientific article

Building the library of RNA 3D nucleotide conformations using the clustering approach

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

scientific article published on 25 August 2022

Entanglements of structure elements revealed in RNA 3D models

scientific article published on 27 September 2021

Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions

scientific article published in February 2022

Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions

scientific article published on 23 August 2021

High-order statistical compressor for long-term storage of DNA sequencing data

scientific article published on 24 March 2016

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

scientific article published on 11 December 2017

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

scientific article published on 14 October 2016

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

scientific article published on 2 September 2015

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

scientific article published on 05 May 2020

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

scientific article published on 01 January 2020

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

scholarly article by Maciej Antczak published in August 2018

RNAloops: a database of RNA multiloops

scientific article published on 2 September 2022

RNAlyzer--novel approach for quality analysis of RNA structural models

scientific article published on 25 April 2013

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

scientific article published in July 2018

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

scientific article

RNAsolo: a repository of cleaned PDB-derived RNA 3D structures

scientific article published on 11 July 2022

RNAspider: a webserver to analyze entanglements in RNA 3D structures

scientific article published on 29 March 2022

RNAssess--a web server for quality assessment of RNA 3D structures

scientific article published on 11 June 2015

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs

scientific article published on 01 January 2019

Structural alignment of protein descriptors - a combinatorial model

scientific article

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