List of works - Michael Riffle

A mass spectrometry proteomics data management platform

scientific article (publication date: September 2012)

Assigning function to yeast proteins by integration of technologies.

scientific article

Bir1 is required for the tension checkpoint

scientific article published on 03 December 2008

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

scientific article

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data

scientific article

Direct measurement of the strength of microtubule attachment to yeast centrosomes.

scientific article

Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry

scientific article published on 20 February 2022

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

scientific article

Genetic Regulation of Dna2 Localization During the DNA Damage Response

scientific article

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments

scientific article published on 27 February 2018

Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development

scientific article

Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation

scientific article published on 21 July 2017

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

scientific article published on 29 May 2013

JobCenter: an open source, cross-platform, and distributed job queue management system optimized for scalability and versatility.

scientific article

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex

scientific article

Kojak: efficient analysis of chemically cross-linked protein complexes.

scientific article

Large-scale prediction of protein-protein interactions from structures

scientific article

Localization of proteins that are coordinately expressed with Cln2 during the cell cycle

scientific article

Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences

scientific article

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

scientific article published on 06 September 2019

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

scientific article

Proteomics data repositories

scientific article published in October 2009

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates

scientific article published on 19 December 2018

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

scientific article

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

scientific article

Survey of metaproteomics software tools for functional microbiome analysis

scientific article published on 10 November 2020

The Ndc80 complex bridges two Dam1 complex rings ⬇️

scientific article published on 13 February 2017

The Proteome Folding Project: proteome-scale prediction of structure and function

scientific article

The Yeast Resource Center Public Data Repository

scientific article

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images

scientific article

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

scientific article

Transmembrane topology and signal peptide prediction using dynamic bayesian networks

scientific article

Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development

scientific article

List of works by Michael Riffle

A mass spectrometry proteomics data management platform

Assigning function to yeast proteins by integration of technologies.

Bir1 is required for the tension checkpoint

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data

Direct measurement of the strength of microtubule attachment to yeast centrosomes.

Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

Genetic Regulation of Dna2 Localization During the DNA Damage Response

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments

Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development

Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

JobCenter: an open source, cross-platform, and distributed job queue management system optimized for scalability and versatility.

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex

Kojak: efficient analysis of chemically cross-linked protein complexes.

Large-scale prediction of protein-protein interactions from structures

Localization of proteins that are coordinately expressed with Cln2 during the cell cycle

Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

Proteomics data repositories

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

Survey of metaproteomics software tools for functional microbiome analysis

The Ndc80 complex bridges two Dam1 complex rings ⬇️

The Proteome Folding Project: proteome-scale prediction of structure and function

The Yeast Resource Center Public Data Repository

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

Transmembrane topology and signal peptide prediction using dynamic bayesian networks

Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development