List of works - Julian König

A reverse genetic approach for generating gene replacement mutants in Ustilago maydis.

scientific article published on 17 August 2004

An autoinhibitory intramolecular interaction proof-reads RNA recognition by the essential splicing factor U2AF2

scientific article published on 18 March 2020

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

scientific article

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

scientific article published on 27 February 2011

Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers

scientific article

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

scientific article published on 07 February 2014

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

scientific article published in Nature Communications

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

scientific article published on January 2013

Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation

scientific article published on 15 December 2013

GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in

scientific article published on 16 May 2018

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

scientific article published in 2022

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors.

scientific article published on 11 April 2018

Insights into the design and interpretation of iCLIP experiments

scientific article published on 16 January 2017

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

scientific article published on 29 November 2017

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

scientific article

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

scientific article published on 19 January 2015

Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP.

scientific article published on January 2016

Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination

scientific article

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

scientific article

Tandem KH domains of Khd4 recognize AUACCC and are essential for regulation of morphology as well as pathogenicity in Ustilago maydis.

scientific article published on 23 October 2009

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells

scientific article published on 29 December 2020

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1

scientific article

The RNA-binding protein Rrm4 is essential for polarity in Ustilago maydis and shuttles along microtubules

scientific article published on 14 November 2006

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

scientific article published on 22 October 2019

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

scientific article

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

scientific article published on 14 December 2018

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

scientific article

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

scientific article

iCLIP: protein-RNA interactions at nucleotide resolution

scientific article

List of works by Julian König

A reverse genetic approach for generating gene replacement mutants in Ustilago maydis.

An autoinhibitory intramolecular interaction proof-reads RNA recognition by the essential splicing factor U2AF2

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation

GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors.

Insights into the design and interpretation of iCLIP experiments

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP.

Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

Tandem KH domains of Khd4 recognize AUACCC and are essential for regulation of morphology as well as pathogenicity in Ustilago maydis.

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1

The RNA-binding protein Rrm4 is essential for polarity in Ustilago maydis and shuttles along microtubules

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

iCLIP: protein-RNA interactions at nucleotide resolution