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List of works by Justin O. Borevitz

2020 Vision for Biology: The Role of Plants in Addressing Grand Challenges in Biology

article

A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana

scientific article published on 23 May 2019

A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation

scientific article

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

scientific article

A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior

scientific article

A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

scientific article published on 29 March 2007

A methyl transferase links the circadian clock to the regulation of alternative splicing

scientific article published on 20 October 2010

A systematic map of genetic variation in Plasmodium falciparum

scientific article

Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis.

scientific article

Adaptation genomics: The angel is in the details

scientific article published on 08 June 2018

Agriculture. Increased food and ecosystem security via perennial grains

scientific article

Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light

scholarly article

An extracellular aspartic protease functions in Arabidopsis disease resistance signaling

scientific article

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies

scientific article (publication date: 2011)

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

scientific article

Association mapping with single-feature polymorphisms

scientific article

Axe: rapid, competitive sequence read demultiplexing using a trie

scientific article published on 01 November 2018

C(m)CGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants

scientific article

Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.

scientific article published on 03 August 2009

DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

scientific article published on 09 September 2016

Deep phenotyping: deep learning for temporal phenotype/genotype classification

scientific article published on 04 August 2018

Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing

scientific article

Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology

scientific article published on 31 October 2014

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.

scientific article published on 11 February 2009

FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions

scientific article

GWAS on multiple traits identifies mitochondrial ACONITASE3 as important for acclimation to submergence stress

scientific article published on 01 March 2022

Gene flow between nascent species: geographic, genotypic and phenotypic differentiation within and between Aquilegia formosa and A. pubescens.

scientific article published on 10 November 2014

Genetic and epigenetic dissection of cis regulatory variation

scientific article published on 14 February 2007

Genetic architecture of regulatory variation in Arabidopsis thaliana

scientific article

Genetic variation for life history sensitivity to seasonal warming in Arabidopsis thaliana

scientific article

Genetics of local adaptation in the laboratory: flowering time quantitative trait loci under geographic and seasonal conditions in Arabidopsis

scientific article

Genome-wide Analysis of Cis-regulatory Divergence between Species in the Arabidopsis Genus

scientific article published on 28 May 2012

Genome-wide association studies in plants: the missing heritability is in the field ⬇️

scientific article published on October 28, 2011

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

scientific article

Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins

scientific article

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

scientific article published on 8 January 2012

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

scholarly article

Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain

scientific article published on 15 March 2017

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape ⬇️

scientific article (publication date: December 2011)

Genomic variation across landscapes: insights and applications

scientific article published on 22 April 2015

Genomics tools for QTL analysis and gene discovery

scientific article published on April 2004

Genotypic diversity effects on biomass production in native perennial bioenergy cropping systems

scientific article

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

article

Global analysis of allele-specific expression in Arabidopsis thaliana

scientific article published on 27 May 2009

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays

scientific article

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions

scientific article published on 16 May 2019

High-resolution, time-lapse imaging for ecosystem-scale phenotyping in the field

scientific article

Inferring population parameters from single-feature polymorphism data

scientific article

Isolation by distance and isolation by environment contribute to population differentiation in Protea repens (Proteaceae L.), a widespread South African species

scientific article

LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms

scientific article

Landscape drivers of genomic diversity and divergence in woodland Eucalyptus

scientific article published on 17 November 2019

Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change.

scientific article published on 24 April 2018

Large-scale identification of single-feature polymorphisms in complex genomes

scientific article published on March 2003

Mapping a plant's chemical vocabulary

article

Methylation's mark on inheritance

scientific article published in March 2013

Mining the HapMap to dissect complex traits

scientific article published on 28 March 2006

Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana

scientific article published on January 2012

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana.

scientific article published on June 2010

Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

scientific article published on 5 June 2008

Natural variation in phytochrome signaling.

scientific article

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating

scientific article published on 12 March 2014

New genetic and genomic tools for the study of floral evolution

Novel Resampling Improves Statistical Power for Multiple-Trait QTL Mapping

scientific article published on 06 January 2017

Pervasive admixture between eucalypt species has consequences for conservation and assisted migration

scientific article published on 12 February 2019

Phenotypic analysis of Arabidopsis mutants: hypocotyl length

scientific article published on 01 March 2008

Plant genomics: the third wave.

scientific article published in January 2004

Population and phylogenomic decomposition via genotyping-by-sequencing in Australian Pelargonium

scientific article published on 10 February 2016

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass

scientific article

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

scientific article published on 02 December 2016

QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines

scientific article

Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation

scientific article

Rapid array mapping of circadian clock and developmental mutations in Arabidopsis.

scientific article

Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis.

scientific article published on 13 July 2017

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

scientific article

Redundancy in genotyping arrays

scientific article

Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis

scientific article

Selecting informative traits for multivariate quantitative trait locus mapping helps to gain optimal power

scientific article published on 26 August 2013

Single-feature polymorphism discovery in the barley transcriptome

scientific article

Source verification of mis-identified Arabidopsis thaliana accessions

scientific article published on 16 June 2011

The extent of linkage disequilibrium in Arabidopsis thaliana

scientific article

The impact of genomics on the study of natural variation in Arabidopsis

scientific article

The next generation of microarray research: applications in evolutionary and ecological genomics.

scientific article published on 8 November 2006

The scale of population structure in Arabidopsis thaliana

scientific article

TraitCapture: genomic and environment modelling of plant phenomic data.

scientific article

Using DNA microarrays to study natural variation

scientific article published on 27 September 2006

Whole genome transcriptome polymorphisms in Arabidopsis thaliana

scientific article

Widespread Interspecific Divergence in Cis-Regulation of Transposable Elements in the Arabidopsis Genus

scientific article published on 15 November 2011

Within and between whorls: comparative transcriptional profiling of Aquilegia and Arabidopsis

scientific article

kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity

scientific article published on 5 September 2017

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