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List of works by Ville Mustonen

A high-definition view of functional genetic variation from natural yeast genomes

scientific article published on 14 January 2014

A method to infer positive selection from marker dynamics in an asexual population.

scientific article published on 5 January 2012

Adaptations to fluctuating selection in Drosophila

scholarly article

Adenoma development in familial adenomatous polyposis and MUTYH-associated polyposis: somatic landscape and driver genes.

scientific article published on 28 September 2015

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

scientific article published on 01 February 2019

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

scientific article published on 15 April 2021

Clonal Heterogeneity Influences the Fate of New Adaptive Mutations.

scientific article published in October 2017

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

scientific article

Computational approaches to identify functional genetic variants in cancer genomes

scientific article published on August 2013

Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression

scientific article published on 18 November 2019

Corrigendum: Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

scientific article published in Nature

Development and validation of a comprehensive genomic diagnostic tool for myeloid malignancies

scientific article published on 27 April 2016

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference ⬇️

scientific article published on September 6, 2011

Drug-induced resistance evolution necessitates less aggressive treatment

scientific article published on 24 September 2021

EMu: probabilistic inference of mutational processes and their localization in the cancer genome ⬇️

scientific article published on April 29, 2013

Eco-evolutionary control of pathogens

scientific article published on 31 July 2020

Emergent neutrality in adaptive asexual evolution

scientific article published on 16 September 2011

Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

scholarly article

Equilibrium statistical mechanics of a grain boundary

scientific article published on 08 March 2005

Evaluating genetic drift in time-series evolutionary analysis

scientific article published on 25 September 2017

Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.

scientific article

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

scientific article

From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.

scientific article

Germline Fitness-Based Scoring of Cancer Mutations ⬇️

scientific article published on March 24, 2011

GraphAlignment: Bayesian pairwise alignment of biological networks.

scientific article

High-definition reconstruction of clonal composition in cancer

scientific article

High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

scientific article published on 13 September 2013

Identifying selection in the within-host evolution of influenza using viral sequence data

scientific article (publication date: July 2014)

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

scientific article

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

scientific article

Molecular evolution under fitness fluctuations

scientific article published on 10 March 2008

Multiobjective optimization identifies cancer-selective combination therapies

scientific article published on 28 December 2020

Pathway and network analysis of cancer genomes

scientific article (publication date: July 2015)

Precise prediction of antibiotic resistance in Escherichia coli from full genome sequences

scholarly article published 4 June 2018

Predicting evolution.

scientific article

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data

scholarly article by Danesh Moradigaravand et al published December 2018 in PLOS Computational Biology

Quantifying selection acting on a complex trait using allele frequency time series data.

scientific article

Rapid identification of genes controlling virulence and immunity in malaria parasites.

scientific article

Relaxation dynamics of a system with a grain boundary

scientific article published on 27 December 2004

Repeatable ecological dynamics govern response of experimental community to antibiotic pulse perturbation

scientific article

Repeatable ecological dynamics govern the response of experimental communities to antibiotic pulse perturbation

scientific article published on 10 August 2020

Shared Molecular Targets Confer Resistance over Short and Long Evolutionary Timescales

scientific article published on 01 April 2019

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts

scientific article

The Repertoire of Mutational Signatures in Human Cancer

The evolutionary landscape of colorectal tumorigenesis ⬇️

scientific article published on 31 August 2018

The mutational signatures of formalin fixation on the human genome

scientific article published in 2022

The repertoire of mutational signatures in human cancer

scientific article published on 05 February 2020

The value of monitoring to control evolving populations ⬇️

scientific article

Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells

scientific article published on 02 August 2018

Understanding biological resilience, from genes to ecosystems

Wetting effects at a grain boundary

scientific article published on 10 August 2004

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