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List of works by Ronald Bontrop

5' regulatory nucleotide sequence of an HLA-A*0101null allele

scientific article published on 01 January 1997

A Specialist Macaque MHC Class I Molecule with HLA-B*27-like Peptide-Binding Characteristics

scientific article published on 11 October 2017

A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules

scientific article published on 31 October 2011

A fine-scale chimpanzee genetic map from population sequencing

scientific article

A high density of human communication-associated genes in chromosome 7q31-q36: differential expression in human and non-human primate cortices.

scientific article published on 19 January 2012

A highly divergent microsatellite facilitating fast and accurate DRB haplotyping in humans and rhesus macaques

scholarly article

A new primate model for multiple sclerosis in the common marmoset

scientific article published on 01 June 2000

A novel gastrokine, Gkn3, marks gastric atrophy and shows evidence of adaptive gene loss in humans

scientific journal article

A prevalent POLG CAG microsatellite length allele in humans and African great apes.

scientific article

A quick and robust MHC typing method for free-ranging and captive primate species

scientific article published on 13 January 2017

A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin

scientific article published on 11 July 2008

A splice site mutation converts an inhibitory killer cell Ig-like receptor into an activating one.

scientific article published on 18 November 2008

A uniquely high level of recombination at the HLA-B locus.

scientific article published on June 1994

AIDS in chimpanzees: the role of MHC genes

scientific article

AIDS-protective HLA-B*27/B*57 and chimpanzee MHC class I molecules target analogous conserved areas of HIV-1/SIVcpz

scientific article

Activation of a myelin basic protein-specific human T cell clone by antigen-presenting cells from rhesus monkeys

scientific article published on 01 September 1995

Allelic diversity at the Mhc-DP locus in rhesus macaques (Macaca mulatta).

scientific article published on January 1995

Allelic diversity of Mhc-DRB alleles in rhesus macaques.

scientific article published on July 2000

Allelic polymorphism in introns 1 and 2 of the HLA-DQA1 gene.

scientific article published on January 2005

An HLA-DQ alpha allele identified at DNA and protein level is strongly associated with celiac disease

scientific article published on 01 December 1988

An unusual mode of concerted evolution of the EGF-TM7 receptor chimera EMR2

scientific article

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scholarly article published in Scientific Data

Autoimmunity in non-human primates: the role of major histocompatibility complex and T cells, and implications for therapy

scientific article published on 01 September 1991

Cell Type and Species-specific Patterns in Neuronal and Non-neuronal Methylomes of Human and Chimpanzee Cortices

scientific article published on 01 October 2018

Characterization and distribution of Mhc-DPB1 alleles in chimpanzee and rhesus macaque populations.

scientific article published in October 1998

Characterization of a novel human T cell receptor beta chain variable region family by transspecies DNA hybridization.

scientific article published on March 1994

Characterization of chimpanzee TCRV gene polymorphism: how old are human TCRV alleles? ⬇️

scientific article published on January 1, 1998

Chronic hepatitis C virus infection established and maintained in chimpanzees independent of dendritic cell impairment

scientific article published on October 2003

Co-evolution of the MHC class I and KIR gene families in rhesus macaques: ancestry and plasticity

scientific article (publication date: September 2015)

Comparative MHC nomenclature: report from the ISAG/IUIS-VIC committee 2018

scientific article published on 24 July 2018

Comparative genetics of MHC polymorphisms in different primate species: duplications and deletions

scientific article

Comparative genetics of a highly divergent DRB microsatellite in different macaque species

scientific article

Comparison of fine-scale recombination rates in humans and chimpanzees

scientific article published on 10 February 2005

Complete withdrawal of immunosuppression in kidney allograft recipients: a prospective study in rhesus monkeys

scientific article published on 01 August 1998

Complete withdrawal of immunosuppression in kidney allograft recipients: a prospective study in rhesus monkeys

scientific article published on 01 October 1998

Complex MHC Class I Gene Transcription Profiles and Their Functional Impact in Orangutans

scientific article published on 18 December 2015

Compound evolutionary history of the rhesus macaque MHC class I B region revealed by microsatellite analysis and localization of retroviral sequences

scientific article

Correction to: Limited MHC class II gene polymorphism in the West African chimpanzee is distributed maximally by haplotype diversity

article

Correlated evolution of nucleotide substitution rates and allelic variation in Mhc-DRB lineages of primates

scientific article

Current knowledge on the major histocompatibility complex class II region in non-human primates.

scientific article published on October 1994

DNA/long peptide vaccination against conserved regions of SIV induces partial protection against SIVmac251 challenge

scientific article published on November 2013

DR haplotype diversity of the cynomolgus macaque as defined by its transcriptome

scientific article

DRB, DQA, DQB and DPB nucleotide sequences of Saguinus oedipus B95-8

scientific article published on 01 February 1994

Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis)

scientific article

Definition of five new simian immunodeficiency virus cytotoxic T-lymphocyte epitopes and their restricting major histocompatibility complex class I molecules: evidence for an influence on disease progression.

scientific article published in August 2000

Determining Mhc-DRB profiles in wild populations of three congeneric true lemur species by noninvasive methods

article

Differences in DNA methylation patterns and expression of the CCRK gene in human and nonhuman primate cortices

scientific article

Differential DNA methylation of vocal and facial anatomy genes in modern humans

scientific article published on 04 March 2020

Differential recombination dynamics within the MHC of macaque species

scientific article

Divergent and invariant HLA class II beta chain isoelectric points

scientific article published on 01 May 1986

Diversity of microRNAs in human and chimpanzee brain

scientific article published on 29 October 2006

Does the MHC Confer Protection against Malaria in Bonobos?

scholarly article by Natasja G de Groot et al published 17 August 2018 in Trends in Immunology

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination

scientific article

Duplication of the CD8 beta-chain gene as a marker of the man-gorilla-chimpanzee clade

scientific article

Effects of MHC Class I on HIV/SIV Disease in Primates ⬇️

scientific article published on January 1, 2002

Epigenomic annotation of gene regulatory alterations during evolution of the primate brain.

scientific article published on 25 January 2016

Evaluation of IL-28B polymorphisms and serum IP-10 in hepatitis C infected chimpanzees

scientific article

Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees

scientific article

Evidence for balancing selection acting on KIR2DL4 genotypes in rhesus macaques of Indian origin

scientific article

Evolution and diversity of copy number variation in the great ape lineage

scientific article published on 03 July 2013

Evolution of HLA-DRB genes

scientific article (publication date: December 2012)

Evolution of major histocompatibility complex polymorphisms and T-cell receptor diversity in primates.

scientific article published on February 1995

Evolution of the major histocompatibility complex DPA1 locus in primates

scientific article published on 01 February 1995

Evolutionary relationships among the primate Mhc-DQA1 and DQA2 alleles.

scientific article

Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations

scientific article published on 18 October 2003

Evolutionary stability of transspecies major histocompatibility complex class II DRB lineages in humans and rhesus monkeys

scientific article published on 01 September 1992

Experimental immune mediated arthritis in rhesus monkeys. A model for human rheumatoid arthritis?

scientific article published on 01 January 1990

Expression of HLA-DQ Antigens in the Small Intestinal Mucosa of Patients with Coeliac Disease ⬇️

scientific article published on June 1, 1991

Extensive Alternative Splicing of KIR Transcripts

Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force

scientific article

Extensive Mhc-DQB variation in humans and non-human primate species

scientific article published on 20 June 2002

Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern from Archaic Humans

article

Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques

scientific article published on 10 February 2006

Fifty-one full-length major histocompatibility complex class II alleles in the olive baboon (Papio anubis).

scientific article published on 2 October 2016

Fine specificity of the alloantiserum MSD-51: epitope mapping of HLA-DRw53 determinants

scientific article published on 01 September 1991

Foreword: Immunogenetics special issue 2017.

scientific article published on 10 July 2017

Full-length cDNA nucleotide sequence of the HLA-B*4202 allele.

scientific article published in July 1997

Full‐length cDNA nucleotide sequence of a serologically undetectable YLLA‐DQA1 allele: HLA‐DQA1*“LA” ⬇️

scientific article published on October 1, 1997

Functional Annotation of Small Noncoding RNAs Target Genes Provides Evidence for a Deregulated Ubiquitin-Proteasome Pathway in Spinocerebellar Ataxia Type 1

scientific article published on 3 October 2012

Functional Implications of Human-Specific Changes in Great Ape microRNAs

scientific article

Genetic makeup of the DR region in rhesus macaques: gene content, transcripts, and pseudogenes

scientific article published on May 2004

Genome-wide analysis of miRNA expression reveals a potential role for miR-144 in brain aging and spinocerebellar ataxia pathogenesis

scientific article

Genomic plasticity of the MHC class I A region in rhesus macaques: extensive haplotype diversity at the population level as revealed by microsatellites

scientific article (publication date: February 2011)

Genomic plasticity of the immune-related Mhc class I B region in macaque species

scientific article

Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti is a genetically distinct population

scientific article

Great ape genetic diversity and population history

scientific article published on 03 July 2013

HLA-DRB4 gene encoded HLA-DR53 specificity segregating with the HLA-DR7, -DQ9 haplotype: unusual association

scientific article published on 01 February 1998

Haplotype diversity generated by ancient recombination-like events in the MHC of Indian rhesus macaques

scientific article

High diversity of MIC genes in non-human primates.

scientific article

High resolution definition of HLA-DRB haplotypes by a simplified microsatellite typing technique.

scientific article published on 24 September 2009

Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting.

scientific article

Human and Rhesus Macaque KIR Haplotypes Defined by Their Transcriptomes.

scientific article

IMGT, the international ImMunoGeneTics database

article

IMGT, the international ImMunoGeneTics database

scientific article published on 01 January 1997

IMGT, the international ImMunoGeneTics database

scientific article published on 01 January 2000

IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex

scientific article

IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex

scientific article (publication date: 4 January 2017)

IPD-MHC: nomenclature requirements for the non-human major histocompatibility complex in the next-generation sequencing era

scientific article published on 19 July 2018

ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005.

scientific article published on 3 January 2006

Identification of DRB alleles in rhesus monkeys using polymerase chain reaction-sequence-specific primers (PCR-SSP) amplification

scientific article published on 01 September 1999

Identification of new mamu-DRB alleles using DGGE and direct sequencing.

scientific article published in January 1997

Immunization with recombinant HLA classes I and II, HIV-1 gp140, and SIV p27 elicits protection against heterologous SHIV infection in rhesus macaques.

scientific article

Impact of endogenous intronic retroviruses on major histocompatibility complex class II diversity and stability

scientific article

Insights on the functional interactions between miRNAs and copy number variations in the aging brain

scientific article

Limited MHC class I intron 2 repertoire variation in bonobos

scientific article published on 16 June 2017

Limited MHC class II gene polymorphism in the West African chimpanzee is distributed maximally by haplotype diversity

scientific article published on 29 August 2018

Liposome-mediated peptide loading of MHC-DR molecules in vivo

scientific article published on 01 June 1997

MHC class I A region diversity and polymorphism in macaque species

scientific article published on 3 March 2007

MHC diversity in Caucasians, investigated using highly heterogeneous noncoding sequence motifs at the DQB1 locus including a retroviral long terminal repeat element, and its comparison to nonhuman primate homologues.

scientific article published on September 2000

MHC polymorphism: AIDS susceptibility in non-human primates

scientific article

MIC gene polymorphism and haplotype diversity in rhesus macaques

scientific article published on 01 March 2007

Major histocompatibility complex ancestral haplotypes in the chimpanzee: identification using C4 allotyping.

scientific article published in May 1991

Major histocompatibility complex class I alleles associated with slow simian immunodeficiency virus disease progression bind epitopes recognized by dominant acute-phase cytotoxic-T-lymphocyte responses

scientific article published on August 2003

Major histocompatibility complex class I-associated vaccine protection from simian immunodeficiency virus-infected peripheral blood cells.

scientific article

Major histocompatibility complex class II DQ diversity in rhesus macaques.

scientific article published in April 1993

Major histocompatibility complex class II-restricted antigen presentation across a species barrier: conservation of restriction determinants in evolution ⬇️

scientific article published on July 1, 1990

Major histocompatibility complex haplotyping and long-amplicon allele discovery in cynomolgus macaques from Chinese breeding facilities

scientific article published on 11 January 2017

Metastable tolerance to rhesus monkey renal transplants is correlated with allograft TGF-beta 1+CD4+ T regulatory cell infiltrates

scientific article published in May 2004

Methylation and expression analyses of the 7q autism susceptibility locus genes MEST , COPG2, and TSGA14 in human and anthropoid primate cortices.

scientific article published on 24 March 2012

Mhc-DRB diversity of the chimpanzee (Pan troglodytes)

scientific article published on January 1, 1992

Mhc-DRB genes of platyrrhine primates.

scientific article published on January 1993

Microarray analysis of nonhuman primates: validation of experimental models in neurological disorders

scientific article published on 5 March 2003

Microsatellite typing of the rhesus macaque MHC region

scientific article published on 5 April 2005

Modeling human arthritic diseases in nonhuman primates.

scientific article

Molecular analysis of HLA-DP specificities HLA-DPw1, -DPw2 and -DPw4: DP beta chain heterogeneity correlates with PLT subtyping

scientific article published on 01 January 1988

Molecular analysis of the HLA-DR5 haplotype

scientific article published on 01 October 1989

Molecular diversity of HLA-DQ. DQ alpha and beta chain isoelectric point differences and their relation to serologically defined HLA-DQ allospecificities

scientific article published on 01 January 1987

Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas

scientific article

Multilocus definition of MHC haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis).

scientific article

Multiple instances of ancient balancing selection shared between humans and chimpanzees

scientific article

Mutational bias provides a model for the evolution of Huntington's disease and predicts a general increase in disease prevalence.

scientific article published in August 1994

No difference in Gag and Env immune-response profiles between vaccinated and non-vaccinated rhesus macaques that control immunodeficiency virus replication

scientific article published on 8 September 2010

No postcopulatory selection against MHC-homozygous offspring: Evidence from a pedigreed captive rhesus macaque colony.

scientific article published on 24 April 2017

Nomenclature for Factors of the HLA System, 1998

scholarly article by Julia Bodmer et al published 1999 in Vox Sanguinis

Nomenclature for Factors of the HLA System, 2004.

scientific article published on 3 March 2005

Nomenclature for factors of the HLA system, 1995

scientific article published on 01 June 1995

Nomenclature for factors of the HLA system, 1995

scientific article published on 01 January 1995

Nomenclature for factors of the HLA system, 1995.

scientific article

Nomenclature for factors of the HLA system, 1996

scientific article published on 01 March 1997

Nomenclature for factors of the HLA system, 1998

scientific article published on 01 April 1999

Nomenclature for factors of the HLA system, 2000

scientific article published on 01 March 2001

Nomenclature for factors of the HLA system, 2002

article

Nomenclature for factors of the HLA system, 2002.

scientific article

Nomenclature for factors of the HLA system, 2004

scientific article (publication date: April 2005)

Nomenclature for factors of the HLA system, 2010

scientific article

Nomenclature for factors of the hla system, 2000

article

Nomenclature for the KIR of non-human species

scientific article published on 04 June 2018

Nomenclature for the major histocompatibility complexes of different species: a proposal.

scientific article published in January 1990

Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species

scientific article

Non-human primates: essential partners in biomedical research

scientific article published on 01 October 2001

Nonhuman genetics. Strong male bias drives germline mutation in chimpanzees

scientific article

Novel DRA alleles extracted from seven macaque cohorts

scientific article published on February 2015

Novel major histocompatibility complex class I alleles extracted from two rhesus macaque populations

scientific article published on 12 October 2010

Origins of De Novo Genes in Human and Chimpanzee

scientific article published on 31 December 2015

Patterns of diversity in HIV-related loci among subspecies of chimpanzee: concordance at CCR5 and differences at CXCR4 and CX3CR1.

scientific article published on 30 January 2009

Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics

scientific article

Polymorphism of C4 and CYP21 genes in various primate species.

scientific article published in April 1991

Polymorphism of the beta-globin region in apes: implications for the origin of human haplotypes.

scientific article published in June 1994

Polymorphisms within the HLA-DR3 haplotypes. I. HLA-DR polymorphisms detected at the protein and DNA levels are reflected by T-cell recognition

scientific article published on 01 January 1986

Polymorphisms within the HLA-DRw6 haplotype. II. Protein charge heterogeneity reflects MLC subtyping of HLA-DRw6 homozygous cells

scientific article published on 01 January 1985

Quantitative and qualitative differences in HLA-DR molecules correlated with antigen-presentation capacity

scientific article published on 01 February 1986

RFLP analysis of the HLA-, ChLA-, and RhLA-DQ alpha chain gene regions: conservation of restriction sites during evolution

scientific article published on 01 January 1989

RFLP analysis of the rhesus monkey MHC class II DR subregion

scientific article published on 01 January 1991

RNA editing independently occurs at three mir-376a-1 sites and may compromise the stability of the microRNA hairpin

scientific article published on 11 July 2017

Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species

scholarly article

Reduced MIC gene repertoire variation in West African chimpanzees as compared to humans

scientific article published on 9 March 2005

Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins

scientific article published in May 2008

Resistance to collagen-induced arthritis in a nonhuman primate species maps to the major histocompatibility complex class I region ⬇️

scientific article published on April 1, 1992

Resistance to collagen-induced arthritis in rats and rhesus monkeys after immunization with attenuated type II collagen.

scientific article

Specific nature of cellular immune responses elicited by chimpanzees against HIV-1.

scientific article

Strong vaccine-induced CD8 T-cell responses have cytolytic function in a chimpanzee clearing HCV infection

scientific article

Structure and diversity of the T-cell receptor alpha chain in rhesus macaque and chimpanzee.

scientific article

Structure, diversity, and evolution of the T-cell receptor VB gene repertoire in primates.

scientific article published on January 1994

T-cell receptor gamma/delta: comparison of gene configurations and function between humans and chimpanzees

scientific article published on January 1, 1992

TRIM5 allelic polymorphism in macaque species/populations of different geographic origins: its impact on SIV vaccine studies

scientific article published on 01 October 2011

The HIV-1 pandemic: does the selective sweep in chimpanzees mirror humankind's future?

scientific article

The Impact of MicroRNAs on Brain Aging and Neurodegeneration

scientific article

The biologic importance of conserved major histocompatibility complex class II motifs in primates.

scientific article published on November 1993

The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts

scientific article published on 2 October 2009

The chimpanzee major histocompatibility complex class II DR subregion contains an unexpectedly high number of beta-chain genes.

scientific article published on January 1990

The common marmoset: A new world primate species with limitedMhcclass II variability ⬇️

scientific article published on September 29, 1998

The diallelic locus encoding the minor histocompatibility antigen HA-1 is evolutionarily conserved.

scientific article published in July 2006

The extreme plasticity of killer cell Ig-like receptor (KIR) haplotypes differentiates rhesus macaques from humans

scientific article published on 04 August 2011

The major histocompatibility complex influences the ethiopathogenesis of MS-like disease in primates at multiple levels.

scientific article

The mosaic of KIR haplotypes in rhesus macaques

scientific article

The orthologs of HLA-DQ and -DP genes display abundant levels of variability in macaque species

scientific article published on 22 October 2016

The repertoire of MHC class I genes in the common marmoset: evidence for functional plasticity

scientific article published on 10 September 2013

The role of major histocompatibility complex polymorphisms on SIV infection in rhesus macaques

scientific article published on 01 June 1996

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scientific article

Two Orangutan Species Have Evolved Different KIR Alleles and Haplotypes.

scientific article published on 6 March 2017

Typing for HLA class II at the product level

scientific article published on 01 January 1985

Unique peptide-binding motif for Mamu-B*037:01: an MHC class I allele common to Indian and Chinese rhesus macaques

scientific article published on 17 September 2013

Unparalleled complexity of the MHC class I region in rhesus macaques

scientific article

Unprecedented polymorphism of Mhc-DRB region configurations in rhesus macaques.

scientific article

Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef.

scientific article

Widespread differences in cortex DNA methylation of the "language gene" CNTNAP2 between humans and chimpanzees

scientific article

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