List of works - Nizar N Batada

Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors

scientific article

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells.

scientific article published on 02 January 2014

CNplot: visualizing pre-clustered networks

scientific article

Chromatin remodelling is a major source of coexpression of linked genes in yeast

scientific article published on 5 September 2007

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

scientific article (publication date: 11 November 2008)

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

scientific article

Copy number variation and selection during reprogramming to pluripotency

scientific article published on March 2011

Depletion of somatic mutations in splicing-associated sequences in cancer genomes

scientific article published on 7 November 2017

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

scholarly article

Elevated coding mutation rate during the reprogramming of human somatic cells into induced pluripotent stem cells

scientific article published in March 2012

Evolution of chromosome organization driven by selection for reduced gene expression noise

scientific article published in August 2007

Evolutionary and physiological importance of hub proteins

scientific article published on 5 June 2006

Frequent mutations in TP53 and CDKN2A found by next-generation sequencing of head and neck cancer cell lines

scientific article published on August 2012

Human somatic cells deficient for RAD52 are impaired for viral integration and compromised for most aspects of homology-directed repair

scientific article published on 10 May 2017

Is there a causal link between PTEN deficient tumors and immunosuppressive tumor microenvironment?

scientific article published on 30 January 2020

Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells

scientific article

SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1.

scientific article published on 24 September 2014

Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a γδ T-cell subtype associated with good clinical outcome

scientific article published on 02 December 2020

Spatial regulation and the rate of signal transduction activation

scientific article

Spines and neurite branches function as geometric attractors that enhance protein kinase C action

scientific article

Still stratus not altocumulus: further evidence against the date/party hub distinction

scientific article

Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized

scientific article

Stratus not altocumulus: a new view of the yeast protein interaction network

scientific article published in October 2006

The impact of the nucleosome code on protein-coding sequence evolution in yeast

scientific article

scID: Identification of equivalent transcriptional cell populations across single cell RNA-seq data using discriminant analysis

scholarly article published 14 November 2018

List of works by Nizar N Batada

Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells.

CNplot: visualizing pre-clustered networks

Chromatin remodelling is a major source of coexpression of linked genes in yeast

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

Copy number variation and selection during reprogramming to pluripotency

Depletion of somatic mutations in splicing-associated sequences in cancer genomes

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

Elevated coding mutation rate during the reprogramming of human somatic cells into induced pluripotent stem cells

Evolution of chromosome organization driven by selection for reduced gene expression noise

Evolutionary and physiological importance of hub proteins

Frequent mutations in TP53 and CDKN2A found by next-generation sequencing of head and neck cancer cell lines

Human somatic cells deficient for RAD52 are impaired for viral integration and compromised for most aspects of homology-directed repair

Is there a causal link between PTEN deficient tumors and immunosuppressive tumor microenvironment?

Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells

SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1.

Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a γδ T-cell subtype associated with good clinical outcome

Spatial regulation and the rate of signal transduction activation

Spines and neurite branches function as geometric attractors that enhance protein kinase C action

Still stratus not altocumulus: further evidence against the date/party hub distinction

Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized

Stratus not altocumulus: a new view of the yeast protein interaction network

The impact of the nucleosome code on protein-coding sequence evolution in yeast

scID: Identification of equivalent transcriptional cell populations across single cell RNA-seq data using discriminant analysis