List of works - Shigehiro Kamitori

A [2]rotaxane capped by a cyclodextrin and a guest: formation of supramolecular [2]rotaxane polymer.

scientific article published in February 2005

Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides

scientific article

Catalytic reaction mechanism of Pseudomonas stutzeri L-rhamnose isomerase deduced from X-ray structures

scientific article

Chemoenzymatic synthesis of the immunoglobulin domain of Tim-3 carrying a complex-type N-glycan by using a one-pot ligation

scientific article published on 19 July 2013

Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages

scientific article

Crystal structure analysis of collagen model peptide (Pro-pro-Gly)10

scientific article published on 01 December 1998

Crystal structure of Aspergillus niger isopullulanase, a member of glycoside hydrolase family 49

scientific article

Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution

scientific article

Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1

scientific article

Crystal structure of a novel homodimeric l-ribulose 3-epimerase from Methylomonus sp

scientific article published on 01 May 2021

Crystal structure of chartreusin derivative A132.

scientific article

Crystal structure of the 2:1 complex between d(GAAGCTTC) and the anticancer drug actinomycin D

scientific article published on 01 May 1992

Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution

scientific article

Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution

scientific article

Crystal structures of Aspergillus oryzae aspartic proteinase and its complex with an inhibitor pepstatin at 1.9A resolution

scientific article (publication date: 7 March 2003)

Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose

scientific article

Crystal structures of cyclomaltohexaose (alpha-cyclodextrin) complexes with p-bromophenol and m-bromophenol.

scientific article published in May 2001

Crystal structures of rare disaccharides, α-D-glucopyranosyl β-D-psicofuranoside, and α-D-galactopyranosyl β-D-psicofuranoside

scientific article published on 09 April 2011

Crystallization and preliminary X-ray analysis of AAMS amidohydrolase, the final enzyme in degradation pathway I of pyridoxine

scientific article published on 30 July 2009

Crystallization and preliminary X-ray analysis of Thermoactinomyces vulgaris R-47 maltooligosaccharide-metabolizing enzyme homologous to glucoamylase

scientific article

Crystallization and preliminary X-ray crystallographic analysis of macrophage/microglia-specific calcium-binding protein Iba1.

scientific article published on 25 February 2004

Crystallization and preliminary X-ray diffraction analysis of a protease-resistant mutant form of human galectin-8.

scientific article published on 24 April 2009

Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri

scientific article

Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase

scientific article

Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway

scientific article

Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1

scientific article

Molecular and crystal structures of two 1,6-anhydro-beta-maltotriose derivatives

scientific article published on 01 December 1995

Monooxygenation by a thermophilic cytochrome P450 via direct electron donation from NADH.

scientific article published on 28 February 2011

Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis

scientific article

Overexpression, crystallization and preliminary X-ray diffraction analysis of L-ribose isomerase from Acinetobacter sp. strain DL-28

scientific article published on 30 September 2011

Overexpression, purification, crystallization and preliminary X-ray crystal analysis of Bacillus pallidusD-arabinose isomerase

scientific article published on 30 September 2008

Overproduction and preliminary X-ray characterization of aspartate aminotransferase from Escherichia coli

scientific article published on 01 March 1987

Purification, crystallization and preliminary X-ray analysis of an HA17-HA70 (HA2-HA3) complex from Clostridium botulinum type C progenitor toxin

scientific article published on 24 December 2013

Purification, crystallization and preliminary X-ray diffraction studies of D-tagatose 3-epimerase from Pseudomonas cichorii.

scientific article published on 27 January 2007

Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the [...]

scientific article

Role of the Tyr270 residue in 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti

scientific article

Self-association of the galectin-9 C-terminal domain via the opposite surface of the sugar-binding site.

scientific article published on 6 February 2013

Structural analysis of fungus-derived FAD glucose dehydrogenase

scientific article

Structural and biochemical characterization of the Clostridium perfringens autolysin catalytic domain.

scientific article published on 7 December 2016

Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme

scientific article published on 02 November 2020

Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein

scientific article

Structure analysis of a collagen-model peptide with a (Pro-Hyp-Gly) sequence repeat

scientific article published on 01 February 1999

Structure and direct electrochemistry of cytochrome P450 from the thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.

scientific article

Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft.

scientific article published on 27 March 2006

Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472)

scientific article

Structure ofl-rhamnose isomerase in complex withl-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site

scientific article

Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues

scientific article

Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change

scientific article published on 30 July 2019

The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product.

scientific article

The deletion of amino-terminal domain in Thermoactinomyces vulgaris R-47 alpha-amylases: effects of domain N on activity, specificity, stability and dimerization.

scientific article published in February 2001

The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus.

scientific article published on 26 February 2018

The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity.

scientific article

X-ray Structures of Human Galectin-9 C-terminal Domain in Complexes with a Biantennary Oligosaccharide and Sialyllactose ⬇️

scientific article published on September 22, 2010

X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase

scientific article published on 26 September 2017

X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate

scientific article

X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.

scientific article published on 5 March 2014

X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains

scientific article

X-ray structure of a protease-resistant mutant form of human galectin-9 having two carbohydrate recognition domains with a metal-binding site

scientific article

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein

scientific article published on 28 August 2019

X-ray structures of Bacillus pallidus d-arabinose isomerase and its complex with l-fucitol

scientific article

X-ray structures of NADPH-dependent carbonyl reductase from Sporobolomyces salmonicolor provide insights into stereoselective reductions of carbonyl compounds.

scientific article published in September 2005

X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction

scientific article

X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates.

scientific article

X-ray structures of the microglia/macrophage-specific protein Iba1 from human and mouse demonstrate novel molecular conformation change induced by calcium binding

scientific article

β-d-Altrose

scientific article published on 10 January 2009

List of works by Shigehiro Kamitori

A [2]rotaxane capped by a cyclodextrin and a guest: formation of supramolecular [2]rotaxane polymer.

Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides

Catalytic reaction mechanism of Pseudomonas stutzeri L-rhamnose isomerase deduced from X-ray structures

Chemoenzymatic synthesis of the immunoglobulin domain of Tim-3 carrying a complex-type N-glycan by using a one-pot ligation

Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages

Crystal structure analysis of collagen model peptide (Pro-pro-Gly)10

Crystal structure of Aspergillus niger isopullulanase, a member of glycoside hydrolase family 49

Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution

Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1

Crystal structure of a novel homodimeric l-ribulose 3-epimerase from Methylomonus sp

Crystal structure of chartreusin derivative A132.

Crystal structure of the 2:1 complex between d(GAAGCTTC) and the anticancer drug actinomycin D

Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution

Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution

Crystal structures of Aspergillus oryzae aspartic proteinase and its complex with an inhibitor pepstatin at 1.9A resolution

Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose

Crystal structures of cyclomaltohexaose (alpha-cyclodextrin) complexes with p-bromophenol and m-bromophenol.

Crystal structures of rare disaccharides, α-D-glucopyranosyl β-D-psicofuranoside, and α-D-galactopyranosyl β-D-psicofuranoside

Crystallization and preliminary X-ray analysis of AAMS amidohydrolase, the final enzyme in degradation pathway I of pyridoxine

Crystallization and preliminary X-ray analysis of Thermoactinomyces vulgaris R-47 maltooligosaccharide-metabolizing enzyme homologous to glucoamylase

Crystallization and preliminary X-ray crystallographic analysis of macrophage/microglia-specific calcium-binding protein Iba1.

Crystallization and preliminary X-ray diffraction analysis of a protease-resistant mutant form of human galectin-8.

Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri

Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase

Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway

Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1

Molecular and crystal structures of two 1,6-anhydro-beta-maltotriose derivatives

Monooxygenation by a thermophilic cytochrome P450 via direct electron donation from NADH.

Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis

Overexpression, crystallization and preliminary X-ray diffraction analysis of L-ribose isomerase from Acinetobacter sp. strain DL-28

Overexpression, purification, crystallization and preliminary X-ray crystal analysis of Bacillus pallidusD-arabinose isomerase

Overproduction and preliminary X-ray characterization of aspartate aminotransferase from Escherichia coli

Purification, crystallization and preliminary X-ray analysis of an HA17-HA70 (HA2-HA3) complex from Clostridium botulinum type C progenitor toxin

Purification, crystallization and preliminary X-ray diffraction studies of D-tagatose 3-epimerase from Pseudomonas cichorii.

Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the [...]

Role of the Tyr270 residue in 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti

Self-association of the galectin-9 C-terminal domain via the opposite surface of the sugar-binding site.

Structural analysis of fungus-derived FAD glucose dehydrogenase

Structural and biochemical characterization of the Clostridium perfringens autolysin catalytic domain.

Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme

Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein

Structure analysis of a collagen-model peptide with a (Pro-Hyp-Gly) sequence repeat

Structure and direct electrochemistry of cytochrome P450 from the thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.

Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft.

Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472)

Structure ofl-rhamnose isomerase in complex withl-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site

Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues

Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change

The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product.

The deletion of amino-terminal domain in Thermoactinomyces vulgaris R-47 alpha-amylases: effects of domain N on activity, specificity, stability and dimerization.

The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus.

The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity.

X-ray Structures of Human Galectin-9 C-terminal Domain in Complexes with a Biantennary Oligosaccharide and Sialyllactose ⬇️

X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase

X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate

X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.

X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains

X-ray structure of a protease-resistant mutant form of human galectin-9 having two carbohydrate recognition domains with a metal-binding site

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein

X-ray structures of Bacillus pallidus d-arabinose isomerase and its complex with l-fucitol

X-ray structures of NADPH-dependent carbonyl reductase from Sporobolomyces salmonicolor provide insights into stereoselective reductions of carbonyl compounds.

X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction

X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates.

X-ray structures of the microglia/macrophage-specific protein Iba1 from human and mouse demonstrate novel molecular conformation change induced by calcium binding

β-d-Altrose