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List of works by John D. Storey

A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis.

scientific article published on 26 April 2019

A computational statistics approach for estimating the spatial range of morphogen gradients

scientific article

A computationally efficient modular optimal discovery procedure

scientific article published on 24 December 2010

A general framework for multiple testing dependence

scholarly article

A genome-wide gene expression signature of environmental geography in leukocytes of Moroccan Amazighs.

scientific article

A genomic storm in critically injured humans

scientific article published on 21 November 2011

A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays

scientific article published on 30 June 2015

A new approach to intensity-dependent normalization of two-channel microarrays

scientific article

A reanalysis of a published Affymetrix GeneChip control dataset

scientific article published on 22 March 2006

Approximate P-Values for Local Sequence Alignments: Numerical Studies

article

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

scientific article published on 08 December 2007

Beyond the E-Value: Stratified Statistics for Protein Domain Prediction.

scientific article

Calibrating the performance of SNP arrays for whole-genome association studies

scientific article

Capturing heterogeneity in gene expression studies by surrogate variable analysis

scientific article

Cause and express

scientific article published on 01 June 2009

Design and analysis of Bar-seq experiments

scientific article

Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study

scientific article

EDGE: extraction and analysis of differential gene expression

scientific article published on 15 December 2005

Eigen-R2 for dissecting variation in high-dimensional studies

scientific article

Empirical Bayes Analysis of a Microarray Experiment

article

Extending Tests of Hardy-Weinberg Equilibrium to Structured Populations

scientific article published on 19 September 2019

Gene expression profiles associated with acute myocardial infarction and risk of cardiovascular death

scientific article published on 30 May 2014

Gene set bagging for estimating the probability a statistically significant result will replicate

scientific article

Gene-expression variation within and among human populations

scientific article published on 11 January 2007

Genetic interactions between polymorphisms that affect gene expression in yeast

scientific article

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae ⬇️

scholarly article

Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.

scientific article published on 9 July 2018

Harnessing naturally randomized transcription to infer regulatory relationships among genes

scientific article (publication date: 2007)

Human transcriptome array for high-throughput clinical studies.

scientific article

Identifying and mapping cell-type-specific chromatin programming of gene expression

scientific article published on 27 January 2014

In vivo regulation of human skeletal muscle gene expression by thyroid hormone

scientific article

Longitudinal transcriptional analysis of developing neointimal vascular occlusion and pulmonary hypertension in rats

scientific article published on 13 April 2004

Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis

scientific article

Mapping the genetic architecture of gene expression in human liver ⬇️

scientific article

Modeling molecular development of breast cancer in canine mammary tumors

scientific article published on 23 December 2020

Multiple locus linkage analysis of genomewide expression in yeast

scientific article

Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry

scientific article published on August 2008

Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships

scientific article published on January 2007

On the design and analysis of gene expression studies in human populations

article

Optimality driven nearest centroid classification from genomic data

scientific article

Posterior error probabilities and false discovery rates: two sides of the same coin

scientific article published on 04 December 2007

Precision and functional specificity in mRNA decay

scientific article

Probabilistic models of genetic variation in structured populations applied to global human studies

scientific article

QVALITY: non-parametric estimation of q-values and posterior error probabilities

scientific article published on 4 February 2009

Real-timein vivoGlobal Transcriptional Dynamics DuringPlasmodium falciparumBlood-stage Development

article

Relaxed significance criteria for linkage analysis

scientific article

Scaling probabilistic models of genetic variation to millions of humans

scientific article published on 7 November 2016

Significance analysis of time course microarray experiments

scientific article

Statistical Methods for Identifying Differentially Expressed Genes in DNA Microarrays

article

Statistical significance for genomewide studies

scientific article

Statistical significance of variables driving systematic variation in high-dimensional data

scientific article

Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach

article

Supervised normalization of microarrays

scientific article

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae

scientific article

Systems-level analysis of mechanisms regulating yeast metabolic flux

scientific article

Testing for genetic associations in arbitrarily structured populations

scientific article published on 30 March 2015

The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments

scientific article published on 23 August 2006

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

scientific article published on 17 January 2012

subSeq: determining appropriate sequencing depth through efficient read subsampling

scientific article published on 3 September 2014

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