List of works - Fabrizio Costa

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains

scientific article published in July 2013

Ambiguity resolution analysis in incremental parsing of natural language.

scientific article published in July 2005

An updated evolutionary classification of CRISPR-Cas systems

scientific article

AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments

scientific article

Bioinformatics of prokaryotic RNAs

scientific article

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles

scientific article published on June 2014

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

scientific article published on September 2014

Characterizing leader sequences of CRISPR loci

scientific article

Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini.

scientific article published on 17 April 2016

GraphClust: alignment-free structural clustering of local RNA secondary structures

scientific article

GraphProt: modeling binding preferences of RNA-binding proteins.

scientific article

Learning first-pass structural attachment preferences with dynamic grammars and recursive neural networks.

scientific article

Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression

scientific article

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions

scientific article published on 28 May 2014

Molecular Graph Augmentation with Rings and Functional Groups ⬇️

scientific article published on September 27, 2010

PTRcombiner: mining combinatorial regulation of gene expression from post-transcriptional interaction maps

scientific article

Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput data.

scientific article

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.

scientific article

List of works by Fabrizio Costa

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains

Ambiguity resolution analysis in incremental parsing of natural language.

An updated evolutionary classification of CRISPR-Cas systems

AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments

Bioinformatics of prokaryotic RNAs

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

Characterizing leader sequences of CRISPR loci

Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini.

GraphClust: alignment-free structural clustering of local RNA secondary structures

GraphProt: modeling binding preferences of RNA-binding proteins.

Learning first-pass structural attachment preferences with dynamic grammars and recursive neural networks.

Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions

Molecular Graph Augmentation with Rings and Functional Groups ⬇️

PTRcombiner: mining combinatorial regulation of gene expression from post-transcriptional interaction maps

Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput data.

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.