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List of works by Auguste Genovesio

3D Automated Nuclear Morphometric Analysis Using Active Meshes

3D Mumford-Shah Based Active Mesh

3D spatial drift correction using Kalman filtering for fluorescence based imaging

A New Color Representation for Intensity Independent Pixel Classification in Confocal Microscopy Images

scholarly article

A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening

scientific article

A high-content subtractive screen for selecting small molecules affecting internalization of GPCRs

scientific article

A high-throughput cell-based assay to screen for drugs affecting PfEMP1 transport to RBC surface

scientific article

A method for discontinuous neurite reconstruction based on diffusion tensor, Hessian eigenvector, and diffused gradient vector fields

A modified fluorescence in situ hybridization protocol for Plasmodium falciparum greatly improves nuclear architecture conservation

scientific article published on 28 April 2010

A novel specific edge effect correction method for RNA interference screenings

scientific article published on 26 November 2011

ALFA: annotation landscape for aligned reads

Active fluctuations modulate gene expression in mouse oocytes

article

Active vector graph for regularized tesselation

An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation

scientific article published on 4 August 2017

An image-based drug susceptibility assay targeting the placental sequestration of Plasmodium falciparum-infected erythrocytes

scientific article

An image-based high-content screening assay for compounds targeting intracellular Leishmania donovani amastigotes in human macrophages

scientific article (publication date: 2012)

Antileishmanial high-throughput drug screening reveals drug candidates with new scaffolds

scientific article

Artificially decreasing cortical tension generates aneuploidy in mouse oocytes

scientific article published on 03 April 2020

Automated Confocal Microscope Bias Correction

article

Automated Identification and Analysis of Visual Micro-experiments on Cellular Microarray

Automated genome-wide visual profiling of cellular proteins involved in HIV infection

scientific article

Automated high-throughput siRNA transfection in raw 264.7 macrophages: a case study for optimization procedure

scientific article

Automated nuclear analysis of Leishmania major telomeric clusters reveals changes in their organization during the parasite's life cycle

scientific article (publication date: 2008)

BIAS FREE FEATURES DETECTION FOR HIGH CONTENT SCREENING

article

Bias image correction via stationarity maximization

article

Biased Image Correction Based on Empirical Mode Decomposition

article

Calibrated mitotic oscillator drives motile ciliogenesis

scientific article

Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier

scientific article

Cerebral microcirculation shear stress levels determineNeisseria meningitidisattachment sites along the blood–brain barrier

Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment

scientific article

Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays

article

Contextual automated 3D analysis of subcellular organelles adapted to high-content screening

scientific article published on 16 July 2010

Coordination of transcriptional and translational regulations in human epithelial cells infected by Listeria monocytogenes

scientific article published on 25 June 2020

Correction

scholarly article published in Journal of Cell Biology

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis

scientific article published on 07 September 2018

Detection and tracking of overlapping cell nuclei for large scale mitosis analyses

scientific article

Development of a cell-based high throughput assay system and IN-house image analysis software for screening of active compounds against dengue virus

scientific article

Development of a multiplex phenotypic cell-based high throughput screening assay to identify novel hepatitis C virus antivirals

scientific article

Dimerization, oligomerization, and aggregation of human amyotrophic lateral sclerosis copper/zinc superoxide dismutase 1 protein mutant forms in live cells

scientific article

Ependymal cilia beating induces an actin network to protect centrioles against shear stress

scientific article published on 11 June 2018

High content cellular microarray for automated drug target deconvolution

scientific article published on 10 January 2011

High content phenotypic cell-based visual screen identifies Mycobacterium tuberculosis acyltrehalose-containing glycolipids involved in phagosome remodeling

scientific journal article

High content screening identifies decaprenyl-phosphoribose 2' epimerase as a target for intracellular antimycobacterial inhibitors

scientific article

High-content classification of nucleocytoplasmic import or export inhibitors

scientific article published on 16 May 2007

High-throughput in vivo genotoxicity testing: an automated readout system for the somatic mutation and recombination test (SMART)

scientific article

High-throughput optical mapping of replicating DNA

IM.Grid, a Grid computing approach for Image Mining of High Throughput-High Content Screening

In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte

scientific article

In vivo large-scale analysis of Drosophila neuronal calcium traces by automated tracking of single somata

scientific article published on 28 April 2020

Increasing the Content of High-Content Screening: An Overview

scientific article

Inhomogeneous deconvolution in a biological images context

Interacting multiple model based method to track moving fluorescent biological spots

Monitored eCLIP: high accuracy mapping of RNA-protein interactions

Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots

scientific article published on May 2006

Neuron branch detection and description using random walk

scientific article published in January 2009

PySpacell: A Python Package for Spatial Analysis of Cell Images

scientific article published on 24 December 2019

Quantification of protein interaction in living cells by two-photon spectral imaging with fluorescent protein fluorescence resonance energy transfer pair devoid of acceptor bleed-through

scientific article published on 10 November 2011

Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes

scientific article published in October 2006

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

scientific article

SUPPORT VECTOR MACHINES FOR AUTOMATIC DETECTION OF TUBERCULOSIS BACTERIA IN CONFOCAL MICROSCOPY IMAGES

Smooth 2D manifold extraction from 3D image stack

scientific article published on 31 May 2017

Split and merge data association filter for dense multi-target tracking

Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region

scientific article

Three-dimensional point spread function model for line-scanning confocal microscope with high-aperture objective.

scientific article

Tracking fluroescent spots in biological video microscopy

Transcription sites are developmentally regulated during the asexual cycle of Plasmodium falciparum

scientific article

Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.

scientific article published on 28 March 2017

Unraveling spatial cellular pattern by computational tissue shuffling

scientific article published on 23 October 2020

Visual genome-wide RNAi screening to identify human host factors required for Trypanosoma cruzi infection

scientific article

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis

scientific article

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis

scientific article published in 2017

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