List of works - Jasmin Fisher

A dynamic physical model of cell migration, differentiation and apoptosis in Caenorhabditis elegans

scientific article published on January 2012

A scenario-based approach to modeling development: a prototype model of C. elegans vulval fate specification

scientific article

A toolbox for discrete modelling of cell signalling dynamics

scientific article published on 01 June 2018

At the interface of biology and computation

BTR: training asynchronous Boolean models using single-cell expression data

scientific article

Bma: Visual Tool for Modeling and Analyzing Biological Networks

article published in 2012

Cell-Specific Computational Modeling of the PIM Pathway in Acute Myeloid Leukemia.

scientific article published on 13 December 2016

Cell-cycle regulation of NOTCH signaling during C. elegans vulval development

scientific article

Cellular resolution models for even skipped regulation in the entire Drosophila embryo

scientific article published on 06 August 2013

Computational insights into Caenorhabditis elegans vulval development

scientific article

Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics

scientific article

Decoding the regulatory network of early blood development from single-cell gene expression measurements.

scientific article

Drug target optimization in chronic myeloid leukemia using innovative computational platform

scientific article published on 3 February 2015

Emergent stem cell homeostasis in the C. elegans germline is revealed by hybrid modeling

scientific article

Executable cancer models: successes and challenges

scientific article published on 27 April 2020

Executable cell biology

scientific article published on November 2007

Executable network of SARS-CoV-2-host interaction predicts drug combination treatments

scientific article published in 2022

Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling

scientific article published on 14 October 2019

Increased post-traumatic survival of neurons in IL-6-knockout mice on a background of EAE susceptibility.

scientific article published in September 2001

Logic programming to predict cell fate patterns and retrodict genotypes in organogenesis

scientific article

Neuroprotection by T-cells depends on their subtype and activation state.

scientific article

Predictive Modelling of Stem Cell Differentiation and Apoptosis in C. elegans

Predictive modeling of signaling crosstalk during C. elegans vulval development

scientific article

Processing, visualising and reconstructing network models from single-cell data.

scientific article

Protective autoimmunity against the enemy within: fighting glutamate toxicity.

scientific article

Qualitative networks: a symbolic approach to analyze biological signaling networks

scientific article

Rethinking drug design in the artificial intelligence era

scientific article published on 04 December 2019

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data.

scientific article

Single-cell analyses of regulatory network perturbations using enhancer-targeting TALEs suggest novel roles for PU.1 during haematopoietic specification

scientific article

Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks ⬇️

scientific article published on August 24, 2012

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

scientific article published on 01 September 2018

The executable pathway to biological networks

scientific article

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. ⬇️

scientific article

Toward synthesizing executable models in biology

scientific article

Vaccination for neuroprotection in the mouse optic nerve: implications for optic neuropathies.

scientific article

Visible Machine Learning for Biomedicine

scientific article published on 01 June 2018

WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.

scientific article

List of works by Jasmin Fisher

A dynamic physical model of cell migration, differentiation and apoptosis in Caenorhabditis elegans

A scenario-based approach to modeling development: a prototype model of C. elegans vulval fate specification

A toolbox for discrete modelling of cell signalling dynamics

At the interface of biology and computation

BTR: training asynchronous Boolean models using single-cell expression data

Bma: Visual Tool for Modeling and Analyzing Biological Networks

Cell-Specific Computational Modeling of the PIM Pathway in Acute Myeloid Leukemia.

Cell-cycle regulation of NOTCH signaling during C. elegans vulval development

Cellular resolution models for even skipped regulation in the entire Drosophila embryo

Computational insights into Caenorhabditis elegans vulval development

Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics

Decoding the regulatory network of early blood development from single-cell gene expression measurements.

Drug target optimization in chronic myeloid leukemia using innovative computational platform

Emergent stem cell homeostasis in the C. elegans germline is revealed by hybrid modeling

Executable cancer models: successes and challenges

Executable cell biology

Executable network of SARS-CoV-2-host interaction predicts drug combination treatments

Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling

Increased post-traumatic survival of neurons in IL-6-knockout mice on a background of EAE susceptibility.

Logic programming to predict cell fate patterns and retrodict genotypes in organogenesis

Neuroprotection by T-cells depends on their subtype and activation state.

Predictive Modelling of Stem Cell Differentiation and Apoptosis in C. elegans

Predictive modeling of signaling crosstalk during C. elegans vulval development

Processing, visualising and reconstructing network models from single-cell data.

Protective autoimmunity against the enemy within: fighting glutamate toxicity.

Qualitative networks: a symbolic approach to analyze biological signaling networks

Rethinking drug design in the artificial intelligence era

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data.

Single-cell analyses of regulatory network perturbations using enhancer-targeting TALEs suggest novel roles for PU.1 during haematopoietic specification

Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks ⬇️

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

The executable pathway to biological networks

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. ⬇️

Toward synthesizing executable models in biology

Vaccination for neuroprotection in the mouse optic nerve: implications for optic neuropathies.

Visible Machine Learning for Biomedicine

WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.