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List of works by Lars Barquist

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

scientific article

A decade of advances in transposon-insertion sequencing

scientific article published on 12 June 2020

A global genomic approach uncovers novel components for twitching motility-mediated biofilm expansion in Pseudomonas aeruginosa

scientific article published in November 2018

A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

scientific article published on 16 July 2020

A high-resolution view of genome-wide pneumococcal transformation

scientific article

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes.

scientific article published on 8 August 2016

Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies

scientific article published on 14 October 2015

An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria

scientific article published on 23 June 2020

An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity

scientific article published on 25 March 2024

Approaches to querying bacterial genomes with transposon-insertion sequencing

scientific article

Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli

scientific article published in 2022

Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium.

scientific article

Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing

scientific article published on 03 December 2019

Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa

scientific article published on 15 June 2015

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published on 22 August 2016

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

scientific article (publication date: 2013)

Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

scientific article published on 03 July 2020

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

scientific article

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published in March 2017

Evolutionary modeling and prediction of non-coding RNAs in Drosophila

scientific article

Functional analysis of Salmonella Typhi adaptation to survival in water

scientific article published on 01 November 2018

Functional analysis of colonization factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonization

scientific article published in 2021

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism

scientific article

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar

scientific article published on 27 August 2013

Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ Ends

scientific article published on 24 May 2018

Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics

scientific article published on 01 May 2021

Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo

scientific article

Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein

scientific article published on 09 July 2020

Global identification of RsmA/N binding sites in <i>Pseudomonas aeruginosa</i> by <i>in vivo</i> UV CLIP-seq

scientific article published on 27 April 2021

HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction

scientific article

High-throughput analysis of gene essentiality and sporulation in Clostridium difficile

scientific article published on 24 February 2015

INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors

scientific article published in 2022

Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica.

scientific article published on 8 May 2018

Molecular phenotyping of infection-associated small non-coding RNAs

scientific article published on November 2016

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

scientific article published on 29 June 2018

Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9

scientific article published on 28 May 2021

Parallel independent evolution of pathogenicity within the genus Yersinia

scientific article

Patterns of genome evolution that have accompanied host adaptation in Salmonella

scientific article

Plugging Small RNAs into the Network

scientific article published on 02 June 2020

RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE.

scientific article

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.

scientific article

RNIE: genome-wide prediction of bacterial intrinsic terminators

scientific article published on 7 April 2011

Rapid transcriptional responses to serum exposure are associated with sensitivity and resistance to antibody-mediated complement killing in invasive Salmonella Typhimurium ST313.

scientific article published on 25 April 2019

Resolving host-pathogen interactions by dual RNA-seq

scientific article

Rfam 11.0: 10 years of RNA families

scientific article

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling ⬇️

scientific article

Role of sapA and yfgA in Susceptibility to Antibody-Mediated Complement-Dependent Killing and Virulence of Salmonella enterica Serovar Typhimurium.

scientific article

Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa.

scientific article

Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families

scientific article published on 20 June 2016

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

scientific article published on 21 January 2016

The agr locus regulates virulence and colonization genes in Clostridium difficile 027.

scientific article

The in vitro and in vivo effects of constitutive light expression on a bioluminescent strain of the mouse enteropathogen Citrobacter rodentium

scientific article published on 22 June 2016

The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition

scientific article published on 04 June 2020

The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq.

scientific article

Transcriptional noise and exaptation as sources for bacterial sRNAs

scientific article published on 05 March 2019

xREI: a phylo-grammar visualization webserver

scientific article published on 3 June 2008

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