List of works by Gavin Ha

A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA

scientific article published in 2022

ARID1A mutations in endometriosis-associated ovarian carcinomas

scientific article

An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup

scientific article

Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer.

scientific article published on 3 January 2018

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

scientific article published in 2022

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

article

Comprehensive Characterization of Cancer Driver Genes and Mutations

article

Correction to: ReMixT: clone-specific genomic structure estimation in cancer

scientific article published on 6 October 2017

Correction: Detection of circulating tumour DNA is associated with inferior outcomes in Ewing sarcoma and osteosarcoma: a report from the Children's Oncology Group

scientific article published on 01 April 2019

Detection of Circulating Tumor DNA in Patients With Leiomyosarcoma With Progressive Disease

scientific article published on 24 January 2019

Detection of Somatic Structural Variants Enables Quantification and Characterization of Circulating Tumor DNA in Children With Solid Tumors

scientific article published on 05 July 2018

Detection of circulating tumour DNA is associated with inferior outcomes in Ewing sarcoma and osteosarcoma: a report from the Children's Oncology Group

scientific article published on 21 August 2018

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.

scientific article published on 16 May 2016

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

scientific article published on 26 November 2014

Genetic ancestry contributes to somatic mutations in lung cancers from admixed Latin American populations

scientific article published on 02 December 2020

Genetic and transcriptional evolution alters cancer cell line drug response

scientific article published in August 2018

Genetic interrogation of circulating multiple myeloma cells at single-cell resolution

scientific article

Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring

scientific article published on 01 June 2020

Genomic Copy Number Dictates a Gene-Independent Cell Response to CRISPR/Cas9 Targeting

scientific article published on 3 June 2016

Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma.

scientific article published on 4 October 2017

Genomic and Functional Approaches to Understanding Cancer Aneuploidy.

scientific article published on 31 March 2018

Genomic and immune profiling of pre-invasive lung adenocarcinoma

scientific article published on 29 November 2019

Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes

scientific article published on 24 April 2017

Genomic discovery and clonal tracking in multiple myeloma by cell-free DNA sequencing

scientific article published on 27 March 2018

Genomic distinctions between metastatic lower and upper tract urothelial carcinoma revealed through rapid autopsy

scientific article published on 30 May 2019

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

scientific article

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

scientific article

Multiplexed functional genomic analysis of 5' untranslated region mutations across the spectrum of prostate cancer

scientific article published on 09 July 2021

Patient-derived xenografts undergo mouse-specific tumor evolution.

scientific article published on 9 October 2017

Patterns of structural variation define prostate cancer across disease states

scientific article published in 2022

Prostate cancer reactivates developmental epigenomic programs during metastatic progression

scientific article published on 20 July 2020

PyClone: statistical inference of clonal population structure in cancer.

scientific article

ReMixT: clone-specific genomic structure estimation in cancer.

scientific article published on 27 July 2017

Recurrent somatic DICER1 mutations in nonepithelial ovarian cancers

scientific article published on 21 December 2011

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

scientific article

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors.

scientific article published on 6 November 2017

Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor.

scientific article published on 29 September 2017

Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing

scientific article published on 18 June 2018

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

scientific article

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

scientific article

The Integrated Genomic Landscape of Thymic Epithelial Tumors

scientific article published in February 2018

The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma.

scientific article published on April 2017

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

scientific article (publication date: 4 April 2012)

The landscape of chromosomal aberrations in breast cancer mouse models reveals driver-specific routes to tumorigenesis

scientific article published on 04 July 2016

Tumor fraction in cell-free DNA as a biomarker in prostate cancer

scientific article published on 02 November 2018

Tumor growth inhibition by olaparib in BRCA2 germline-mutated patient-derived ovarian cancer tissue xenografts ⬇️

scientific article published on November 19, 2010

Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities

scientific article published in September 2011

Whole-exome sequencing of cell-free DNA and circulating tumor cells in multiple myeloma.

scientific article

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

scientific article

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