List of works - Sudin Bhattacharya

A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, 7, 8-Tetrachlorodibenzo-p-Dioxin in the Mouse Liver

scientific article published on 02 November 2021

A Theoretical Model of the Wnt Signaling Pathway in the Epithelial Mesenchymal Transition

scientific article published on 10 October 2017

A bistable switch underlying B-cell differentiation and its disruption by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin

scientific article

A deterministic map of Waddington's epigenetic landscape for cell fate specification

scientific article

A map of the PPARα transcription regulatory network for primary human hepatocytes

scientific article published on 22 November 2013

Adaptive Posttranslational Control in Cellular Stress Response Pathways and Its Relationship to Toxicity Testing and Safety Assessment

scientific article

All-or-none suppression of B cell terminal differentiation by environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin

scientific article published on 26 January 2013

Aryl Hydrocarbon Receptor Activation Suppresses EBF1 and PAX5 and Impairs Human B Lymphopoiesis.

scientific article

Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs

scientific article published on 01 May 2022

Bistable Signaling Motifs and Cell Fate Decisions

Computational Systems Biology Modeling of Dosimetry and Cellular Response Pathways

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing

scientific article published in February 2010

Fractal dimensions of silica gels generated using reactive molecular dynamics simulations.

scientific article published in March 2005

Gene and Protein Expression- Modeling Nested Motifs in Cellular and Tissue Response Networks

article

Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver

scientific article published on 14 November 2019

Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells.

scientific article published on 10 February 2017

Identifying qualitative differences in PPARα signaling networks in human and rat hepatocytes and their significance for next generation chemical risk assessment methods

scientific article published on 15 October 2019

Modeling drug- and chemical-induced hepatotoxicity with systems biology approaches.

scientific article

Molecular signaling network motifs provide a mechanistic basis for cellular threshold responses

scientific article

Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in investigating mechanisms of hepatotoxicity, cell signaling and ADME.

scientific article published on 23 August 2013

Role of Core Biological Motifs in Dose-Response Modeling: An Example with Switchlike Circuits

Stochastic modeling of B lymphocyte terminal differentiation and its suppression by dioxin

scientific article

The role of cellular contact and TGF-beta signaling in the activation of the epithelial mesenchymal transition (EMT)

scientific article published on 08 October 2018

Toxicity testing in the 21 century: defining new risk assessment approaches based on perturbation of intracellular toxicity pathways

scientific article

Toxicogenomics for transcription factor-governed molecular pathways: moving on to roles beyond classification and prediction

scientific article published on 25 November 2012

Ultrasensitive Response Motifs in Biochemical Networks

article

Ultrasensitive response motifs: basic amplifiers in molecular signalling networks

scientific article

List of works by Sudin Bhattacharya

A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, 7, 8-Tetrachlorodibenzo-p-Dioxin in the Mouse Liver

A Theoretical Model of the Wnt Signaling Pathway in the Epithelial Mesenchymal Transition

A bistable switch underlying B-cell differentiation and its disruption by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin

A deterministic map of Waddington's epigenetic landscape for cell fate specification

A map of the PPARα transcription regulatory network for primary human hepatocytes

Adaptive Posttranslational Control in Cellular Stress Response Pathways and Its Relationship to Toxicity Testing and Safety Assessment

All-or-none suppression of B cell terminal differentiation by environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin

Aryl Hydrocarbon Receptor Activation Suppresses EBF1 and PAX5 and Impairs Human B Lymphopoiesis.

Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs

Bistable Signaling Motifs and Cell Fate Decisions

Computational Systems Biology Modeling of Dosimetry and Cellular Response Pathways

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing

Fractal dimensions of silica gels generated using reactive molecular dynamics simulations.

Gene and Protein Expression- Modeling Nested Motifs in Cellular and Tissue Response Networks

Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver

Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells.

Identifying qualitative differences in PPARα signaling networks in human and rat hepatocytes and their significance for next generation chemical risk assessment methods

Modeling drug- and chemical-induced hepatotoxicity with systems biology approaches.

Molecular signaling network motifs provide a mechanistic basis for cellular threshold responses

Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in investigating mechanisms of hepatotoxicity, cell signaling and ADME.

Role of Core Biological Motifs in Dose-Response Modeling: An Example with Switchlike Circuits

Stochastic modeling of B lymphocyte terminal differentiation and its suppression by dioxin

The role of cellular contact and TGF-beta signaling in the activation of the epithelial mesenchymal transition (EMT)

Toxicity testing in the 21 century: defining new risk assessment approaches based on perturbation of intracellular toxicity pathways

Toxicogenomics for transcription factor-governed molecular pathways: moving on to roles beyond classification and prediction

Ultrasensitive Response Motifs in Biochemical Networks

Ultrasensitive response motifs: basic amplifiers in molecular signalling networks