List of works - Narcis Fernandez-Fuentes

A collection of designed peptides to target SARS-Cov-2 – ACE2 interaction: PepI-Covid19 database

scientific article published on 30 April 2020

A comparison of shared patterns of differential gene expression and gene ontologies in response to water-stress in roots and leaves of four diverse genotypes of Lolium and Festuca spp. temperate pasture grasses

scientific article published on 08 April 2021

A mutation in the mitochondrial fission gene Dnm1l leads to cardiomyopathy

scientific journal article

A supersecondary structure library and search algorithm for modeling loops in protein structures

scientific article

ArchDB 2014: structural classification of loops in proteins

scientific article

ArchDB: automated protein loop classification as a tool for structural genomics.

scientific article published on January 2004

ArchPRED: a template based loop structure prediction server.

scientific article

Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription

scientific article published on 21 November 2018

Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis.

scientific article

CAPS-DB: a structural classification of helix-capping motifs.

scientific article

Classification of common functional loops of kinase super-families

scientific article published in August 2004

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

scientific article

Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex

scientific article

Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)

scientific article published on 30 July 2019

Draft Genome Assemblies of Xylose-Utilizing Candida tropicalis and Candida boidinii with Potential Application in Biochemical and Biofuel Production

scientific article published on 15 February 2018

Exchanging murine and human immunoglobulin constant chains affects the kinetics and thermodynamics of antigen binding and chimeric antibody autoreactivity

scientific article

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

scientific article published on 6 March 2014

GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets

scientific article published on 07 March 2019

Genetic and functional characterization of disease associations explains comorbidity

scientific article published on 24 July 2017

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

scientific article published on 18 September 2015

Homozygous FOXE3 mutations cause non-syndromic, bilateral, total sclerocornea, aphakia, microphthalmia and optic disc coloboma ⬇️

scientific article published on June 23, 2010

Homozygous mutations in PXDN cause congenital cataract, corneal opacity, and developmental glaucoma

scientific article

Human IgG1 Responses to Surface Localised Schistosoma mansoni Ly6 Family Members Drop following Praziquantel Treatment

scientific article published on 6 July 2015

Insight into the machinery that oils chromatin dynamics

scientific article published on 28 November 2016

Insights into the mechanism of microtubule stabilization by Taxol.

scholarly article

Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits.

scientific article

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

scientific article

Knowledge-based modeling of peptides at protein interfaces: PiPreD.

scientific article published on 23 December 2014

M4T: a comparative protein structure modeling server.

scientific article

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins

scientific article published on 4 July 2016

Methyl-CpG-binding (SmMBD2/3) and chromobox (SmCBX) proteins are required for neoblast proliferation and oviposition in the parasitic blood fluke Schistosoma mansoni.

scientific article

Next generation sequencing identifies mutations in Atonal homolog 7 (ATOH7) in families with global eye developmental defects ⬇️

scientific article published on 7 November 2011

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

scientific article published on 27 September 2017

PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces

scientific article

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.

scientific article

Presaging Critical Residues in Protein interfaces-Web Server (PCRPi-W): A Web Server to Chart Hot Spots in Protein Interfaces ⬇️

scientific article published on August 23, 2010

Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer

scientific article

Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment

scientific article published in Nature Communications

Structural characteristics of novel protein folds

scientific article

The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans

scientific article published on 8 July 2016

The rumen microbiome: an underexplored resource for novel antimicrobial discovery.

scientific article published in December 2017

VORFFIP-driven dock: V-D2OCK, a fast and accurate protein docking strategy ⬇️

scientific article published on 12 March 2015

iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.

scientific article published on 9 December 2016

List of works by Narcis Fernandez-Fuentes

A collection of designed peptides to target SARS-Cov-2 – ACE2 interaction: PepI-Covid19 database

A comparison of shared patterns of differential gene expression and gene ontologies in response to water-stress in roots and leaves of four diverse genotypes of Lolium and Festuca spp. temperate pasture grasses

A mutation in the mitochondrial fission gene Dnm1l leads to cardiomyopathy

A supersecondary structure library and search algorithm for modeling loops in protein structures

ArchDB 2014: structural classification of loops in proteins

ArchDB: automated protein loop classification as a tool for structural genomics.

ArchPRED: a template based loop structure prediction server.

Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription

Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis.

CAPS-DB: a structural classification of helix-capping motifs.

Classification of common functional loops of kinase super-families

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex

Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)

Draft Genome Assemblies of Xylose-Utilizing Candida tropicalis and Candida boidinii with Potential Application in Biochemical and Biofuel Production

Exchanging murine and human immunoglobulin constant chains affects the kinetics and thermodynamics of antigen binding and chimeric antibody autoreactivity

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets

Genetic and functional characterization of disease associations explains comorbidity

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

Homozygous FOXE3 mutations cause non-syndromic, bilateral, total sclerocornea, aphakia, microphthalmia and optic disc coloboma ⬇️

Homozygous mutations in PXDN cause congenital cataract, corneal opacity, and developmental glaucoma

Human IgG1 Responses to Surface Localised Schistosoma mansoni Ly6 Family Members Drop following Praziquantel Treatment

Insight into the machinery that oils chromatin dynamics

Insights into the mechanism of microtubule stabilization by Taxol.

Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits.

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Knowledge-based modeling of peptides at protein interfaces: PiPreD.

M4T: a comparative protein structure modeling server.

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins

Methyl-CpG-binding (SmMBD2/3) and chromobox (SmCBX) proteins are required for neoblast proliferation and oviposition in the parasitic blood fluke Schistosoma mansoni.

Next generation sequencing identifies mutations in Atonal homolog 7 (ATOH7) in families with global eye developmental defects ⬇️

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.

Presaging Critical Residues in Protein interfaces-Web Server (PCRPi-W): A Web Server to Chart Hot Spots in Protein Interfaces ⬇️

Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer

Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment

Structural characteristics of novel protein folds

The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans

The rumen microbiome: an underexplored resource for novel antimicrobial discovery.

VORFFIP-driven dock: V-D2OCK, a fast and accurate protein docking strategy ⬇️

iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.