List of works by Lyle D. Burgoon

A Market-Basket Approach to Predict the Acute Aquatic Toxicity of Munitions and Energetic Materials

scientific article (publication date: June 2016)

A cross-species analysis of the rodent uterotrophic program: elucidation of conserved responses and targets of estrogen signaling

scientific article published on 20 September 2005

A decision analysis framework for estimating the potential hazards for drinking water resources of chemicals used in hydraulic fracturing fluids

scientific article published on 22 September 2016

A framework for the next generation of risk science

scientific article

A graphical systems model and tissue-specific functional gene sets to aid transcriptomic analysis of chemical impacts on the female teleost reproductive axis

scientific article

AOP: An R Package For Sufficient Causal Analysis in Pathway-based Screening of Drugs and Chemicals for Adversity

Adverse Outcome Pathways for Regulatory Applications: Examination of Four Case Studies With Different Degrees of Completeness and Scientific Confidence.

scientific article

Analysis of Toxicogenomic Databases

Applying comprehensive environmental assessment to research planning for multiwalled carbon nanotubes: Refinements to inform future stakeholder engagement

scientific article published on 23 May 2015

Autoencoder Predicting Estrogenic Chemical Substances (APECS): An improved approach for screening potentially estrogenic chemicals using in vitro assays and deep learning

scholarly article published May 2017

Automated dose-response analysis and comparative toxicogenomic evaluation of the hepatic effects elicited by TCDD, TCDF, and PCB126 in C57BL/6 mice.

scientific article

Automated dose-response analysis of the relative hepatic gene expression potency of TCDF in C57BL/6 mice

scientific article published on 12 August 2009

Automated quantitative dose-response modeling and point of departure determination for large toxicogenomic and high-throughput screening data sets

scientific article

Bioinformatics: databasing and gene annotation

scientific article published on January 2008

Burst and principal components analyses of MEA data for 16 chemicals describe at least three effects classes

scientific article

Can data science inform environmental justice and community risk screening for type 2 diabetes?

scientific article

Clearing the standards landscape: the semantics of terminology and their impact on toxicogenomics

scientific article published on 5 May 2007

Comparative Toxicogenomics in Mechanistic and Predictive Toxicology

Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells

scientific article published on 14 August 2009

Comparative analysis of dioxin response elements in human, mouse and rat genomic sequences.

scientific article published on 24 August 2004

Comparative metabolomic and genomic analyses of TCDD-elicited metabolic disruption in mouse and rat liver

scientific article published on 29 September 2011

Comparative temporal and dose-dependent morphological and transcriptional uterine effects elicited by tamoxifen and ethynylestradiol in immature, ovariectomized mice

scientific article

Comparative temporal toxicogenomic analysis of TCDD- and TCDF-mediated hepatic effects in immature female C57BL/6 mice

scientific article

Comparative toxicogenomic analysis of the hepatotoxic effects of TCDD in Sprague Dawley rats and C57BL/6 mice

scientific article published on 07 September 2006

Comparative toxicogenomic examination of the hepatic effects of PCB126 and TCDD in immature, ovariectomized C57BL/6 mice

scientific article published on 27 November 2007

Development of analytical methods for NMR spectra and application to a 13C toxicology study

article

Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

scientific article

Dioxin induces an estrogen-like, estrogen receptor-dependent gene expression response in the murine uterus

scientific article published on 8 February 2006

Effects of TCDD on the expression of nuclear encoded mitochondrial genes

scientific article

Effects of culture conditions on estrogen-mediated hepatic in vitro gene expression and correlation to in vivo responses.

scientific article published on 7 March 2006

Effects of tamoxifen and ethynylestradiol cotreatment on uterine gene expression in immature, ovariectomized mice

scientific article published on 13 July 2010

Empirical bayes gene screening tool for time-course or dose-response microarray data

scientific article

Estimating the Potential Toxicity of Chemicals Associated with Hydraulic Fracturing Operations Using Quantitative Structure-Activity Relationship Modeling.

scientific article published on 29 June 2016

Estrogen receptor-dependent regulation of CYP2B6 in human breast cancer cells

scientific article published on 14 January 2010

Gene expression analysis points to hemostasis in livers of rats cotreated with lipopolysaccharide and ranitidine

scientific journal article

Genome-wide computational analysis of dioxin response element location and distribution in the human, mouse, and rat genomes

scientific article

Hypoxia-inducible factor-1α regulates the expression of genes in hypoxic hepatic stellate cells important for collagen deposition and angiogenesis

scientific article

Identification and Characterization of Genes Susceptible to Transcriptional Cross-Talk between the Hypoxia and Dioxin Signaling Cascades Volume 19, Number 10, October, 2006, pp 1284−1293

article

Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades

scientific article

In vivo-in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue

scientific article

Inhibition of estrogen-mediated uterine gene expression responses by dioxin

scientific article published on 17 October 2007

Loss of Hif-2α Rescues the Hif-1α Deletion Phenotype of Neonatal Respiratory Distress In Mice

scientific article (publication date: 2015)

MIPHENO: data normalization for high throughput metabolite analysis

scientific article

Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action

scientific article published on 19 September 2013

Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice

scientific article

Normalization of two-channel microarray experiments: a semiparametric approach.

scientific article published on 28 October 2004

Overview of Chronic Oral Toxicity Values for Chemicals Present in Hydraulic Fracturing Fluids, Flowback, and Produced Waters

scientific article published on 6 April 2016

Oxidative stress is important in the pathogenesis of liver injury induced by sulindac and lipopolysaccharide cotreatment

scientific article

PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands

scientific article published on 18 December 2009

Pharmacogenomics

Phenobarbital elicits unique, early changes in the expression of hepatic genes that affect critical pathways in tumor-prone B6C3F1 mice

scientific article published on 06 March 2009

Plastids are major regulators of light signaling in Arabidopsis

scientific article published on March 2012

Predicting the Probability that a Chemical Causes Steatosis Using Adverse Outcome Pathway Bayesian Networks (AOPBNs)

scientific article published on 13 November 2019

Promoter analysis of TCDD-inducible genes in a thymic epithelial cell line indicates the potential for cell-specific transcription factor crosstalk in the AhR response

scientific article

Pulmonary inflammatory and fibrotic responses in Fischer 344 rats after intratracheal instillation exposure to Libby amphibole

scientific article published in January 2011

Response to Cohen et al. (2016) regarding response to Druwe and Burgoon

scientific article published on 7 October 2016

Revisiting Cohen et al. 2015, Cohen et al. 2014 and Waalkes et al. 2014: a bayesian re-analysis of tumor incidences

scientific article

Species-specific regulation of PXR/CAR/ER-target genes in the mouse and rat liver elicited by o, p'-DDT

scientific article published on 16 October 2008

Systematic Omics Analysis Review (SOAR) tool to support risk assessment

scientific article

Systems biology and biomarkers of early effects for occupational exposure limit setting

journal article published in 2015

Tamoxifen-elicited uterotrophy: cross-species and cross-ligand analysis of the gene expression program

scientific article

Temporal and dose-dependent hepatic gene expression patterns in mice provide new insights into TCDD-Mediated hepatotoxicity

scientific article published on 30 March 2005

Temporal- and dose-dependent hepatic gene expression changes in immature ovariectomized mice following exposure to ethynyl estradiol.

scientific article published on 19 February 2004

The AOPOntology: A Semantic Artificial Intelligence Tool for Predictive Toxicology

scholarly article published 5 March 2018

The constitutive active/androstane receptor facilitates unique phenobarbital-induced expression changes of genes involved in key pathways in precancerous liver and liver tumors

scientific article published on 29 May 2009

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The need for standards, not guidelines, in biological data reporting and sharing

scientific article

The next generation of risk assessment multi-year study - highlights of findings, applications to risk assessment, and future directions

journal article published in 2016

Time Course And Dose Response Of Ozone-Induced Differential Gene Expression Profiles In Primary Human Bronchial Epithelial Cells

article

Toward a checklist for exchange and interpretation of data from a toxicology study

scientific article

Toxicoinformatics for Systems Toxicology

Transcription factor crosstalk controls the transcriptional response to AhR over activation by TCDD in thymic epithelial cells

Using In Vitro High-Throughput Screening Data for Predicting Benzo[k]Fluoranthene Human Health Hazards

scientific article

What do the data show? Knowledge map development for comprehensive environmental assessment

scientific article

dbZach toxicogenomic information management system

scientific article published on March 2007

dbZach: A MIAME-compliant toxicogenomic supportive relational database

scientific article published on 10 January 2006

o,p'-DDT elicits PXR/CAR-, not ER-, mediated responses in the immature ovariectomized rat liver

scientific journal article

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