List of works - Jari Häkkinen

${\rm b\bar b}$ -fragmentation and B $\pi$ correlations

A Potts Neuron Approach to Communication Routing.

scientific article published in July 1998

ACID: a database for microarray clone information

scientific article published on 12 February 2004

Abstract P1-06-01: Putting multigene signatures to the test: Prognostic assessment in population-based contemporary clinical breast cancer

Abstract P1-07-17: The SCAN-B study: 5-year summary of a large-scale population-based prospective breast cancer translational genomics platform covering a wide geography of Sweden (NCT02306096)

scholarly article by LH Saal et al published 14 February 2017 in Cancer Research

Abstract P2-02-09: Breast cancer subtype distribution and circulating tumor DNA in response to neoadjuvant chemotherapy: Experiences from a preoperative cohort within SCAN-B

Abstract P3-02-02: Concordance between immunohistochemical and gene-expression based subtyping of early breast cancer using core needle biopsies and surgical specimens - experices from SCAN-B

article

Abstract P4-09-03: On the development and clinical value of RNA-sequencing-based classifiers for prediction of the five conventional breast cancer biomarkers: A report from the population-based multicenter SCAN-B study

Agreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancer

scientific article published on 20 August 2019

Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancer

scientific article published on 17 February 2020

Automated reporting from gel-based proteomics experiments using the open source Proteios database application

scientific article

BASE--2nd generation software for microarray data management and analysis

scientific article (publication date: 12 October 2009)

Bioinformatic strategies for unambiguous identification of prostate specific antigen in clinical samples

scientific article

Bose-Einstein and colour interference in W-pair decays

Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative

scientific article published on 09 March 2018

Colour connections in e+e− annihilation

Colour interference and confinement effects in W-pair production

article

Colour: a computer program for QCD colour factor calculations

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers

scientific article published on 27 July 2020

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series

scientific article published on 21 August 2019

Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

scientific article

Frequent miRNA-convergent fusion gene events in breast cancer

scientific article published on 5 October 2017

GOBO: gene expression-based outcome for breast cancer online

scientific article

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

scientific article

Improving automatic peptide mass fingerprint protein identification by combining many peak sets

scientific article published in August 2004

Improving missing value imputation of microarray data by using spot quality weights

scientific article

Is there screwiness at the end of the QCD cascades?

scholarly article in Journal of High Energy Physics, 1998 no. 9, September 1998

Laboratory Data and Sample Management for Proteomics ⬇️

scientific article published on January 1, 2011

Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.

scientific article published on 12 March 2018

Molecular and genetic diversity in the metastatic process of melanoma

scientific article

Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry

scientific article

PROTEIOS: an open source proteomics initiative

scientific article

Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort

scientific article published on 24 July 2019

Prognostic implications of the expression levels of different immunoglobulin heavy chain-encoding RNAs in early breast cancer

scientific article published on 06 July 2020

Proteomic variation is as large within as between strawberry varieties

scientific article published on 4 July 2007

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

scientific article published in April 2008

Proteomics Data Collection - 3rd ProDaC workshop April 22nd 2008, Toledo, Spain

scientific article published in October 2008

Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.

scientific article published in July 2009

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

article

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

scientific article

Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic ⬇️

scientific article published on 18 May 2016

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry

scientific article published on 25 April 2007

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine

scientific article

The X-Linked DDX3X RNA Helicase Dictates Translation Reprogramming and Metastasis in Melanoma

scientific article published on 01 June 2019

The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome

scientific article published on 14 September 2020

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

scientific article

Tumor genetic heterogeneity analysis of chronic sun-damaged melanoma

scientific article published on 07 December 2019

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

scientific article published on 30 September 2019

List of works by Jari Häkkinen

${\rm b\bar b}$ -fragmentation and B $\pi$ correlations

A Potts Neuron Approach to Communication Routing.

ACID: a database for microarray clone information

Abstract P1-06-01: Putting multigene signatures to the test: Prognostic assessment in population-based contemporary clinical breast cancer

Abstract P1-07-17: The SCAN-B study: 5-year summary of a large-scale population-based prospective breast cancer translational genomics platform covering a wide geography of Sweden (NCT02306096)

Abstract P2-02-09: Breast cancer subtype distribution and circulating tumor DNA in response to neoadjuvant chemotherapy: Experiences from a preoperative cohort within SCAN-B

Abstract P3-02-02: Concordance between immunohistochemical and gene-expression based subtyping of early breast cancer using core needle biopsies and surgical specimens - experices from SCAN-B

Abstract P4-09-03: On the development and clinical value of RNA-sequencing-based classifiers for prediction of the five conventional breast cancer biomarkers: A report from the population-based multicenter SCAN-B study

Agreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancer

Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancer

Automated reporting from gel-based proteomics experiments using the open source Proteios database application

BASE--2nd generation software for microarray data management and analysis

Bioinformatic strategies for unambiguous identification of prostate specific antigen in clinical samples

Bose-Einstein and colour interference in W-pair decays

Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative

Colour connections in e+e− annihilation

Colour interference and confinement effects in W-pair production

Colour: a computer program for QCD colour factor calculations

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series

Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

Frequent miRNA-convergent fusion gene events in breast cancer

GOBO: gene expression-based outcome for breast cancer online

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Improving automatic peptide mass fingerprint protein identification by combining many peak sets

Improving missing value imputation of microarray data by using spot quality weights

Is there screwiness at the end of the QCD cascades?

Laboratory Data and Sample Management for Proteomics ⬇️

Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.

Molecular and genetic diversity in the metastatic process of melanoma

Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry

PROTEIOS: an open source proteomics initiative

Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort

Prognostic implications of the expression levels of different immunoglobulin heavy chain-encoding RNAs in early breast cancer

Proteomic variation is as large within as between strawberry varieties

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

Proteomics Data Collection - 3rd ProDaC workshop April 22nd 2008, Toledo, Spain

Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic ⬇️

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine

The X-Linked DDX3X RNA Helicase Dictates Translation Reprogramming and Metastasis in Melanoma

The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

Tumor genetic heterogeneity analysis of chronic sun-damaged melanoma

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

Γ-polarization in e+e−-annihilation at the Z0-pole