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List of works by Wenjie Shu

A novel representation of RNA secondary structure based on element-contact graphs

scientific article

Accurate identification of RNA editing sites from primitive sequence with deep neural networks.

scientific article

An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape

scientific article

BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone.

scientific article published on 17 February 2017

Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome

scientific article

Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken genomes.

scientific article

Deep Learning and its Applications in Biomedicine.

scientific article published on 6 March 2018

De novo identification of replication-timing domains in the human genome by deep learning

scientific article

Differential roles of Stella in the modulation of DNA methylation during oocyte and zygotic development

article

Embryonic defects induced by maternal obesity in mice derive from Stella insufficiency in oocytes.

scientific article published on 19 February 2018

EvoRSR: an integrated system for exploring evolution of RNA structural robustness

scientific article published on 13 August 2009

Functional annotation of HOT regions in the human genome: implications for human disease and cancer.

scientific article published on 26 June 2015

Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease.

scientific article

Genome-wide identification and characterisation of HOT regions in the human genome.

scientific article

High-resolution annotation of the mouse preimplantation embryo transcriptome using long-read sequencing

scientific article published on 27 May 2020

In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA

scientific article

In silico genetic robustness analysis of secondary structural elements in the miRNA gene.

scientific article published on 22 October 2008

LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs

scientific article published on 01 January 2019

Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers

scientific article

METTL3-mediated m6A is required for murine oocyte maturation and maternal-to-zygotic transition

scientific article published on 09 January 2020

Oocyte competence is maintained by m6A methyltransferase KIAA1429-mediated RNA metabolism during mouse follicular development

scientific article published on 24 February 2020

PEDLA: predicting enhancers with a deep learning-based algorithmic framework.

scientific article published on 22 June 2016

Publisher Correction: Embryonic defects induced by maternal obesity in mice derive from Stella insufficiency in oocytes

scientific article published on 01 May 2018

RDMAS: a web server for RNA deleterious mutation analysis

scientific article

Selection of antisense oligonucleotides based on multiple predicted target mRNA structures

scientific article

The landscape of the A-to-I RNA editome from 462 human genomes

scientific article published in Scientific Reports

iFORM: Incorporating Find Occurrence of Regulatory Motifs

scientific article

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