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List of works by John C. McEwan

A directed search in the region of GDF8 for quantitative trait loci affecting carcass traits in Texel sheep

scientific article published on 01 September 2005

A genome wide survey of SNP variation reveals the genetic structure of sheep breeds

scientific article

A high throughput single nucleotide polymorphism multiplex assay for parentage assignment in New Zealand sheep

scientific article (publication date: 2014)

A multiway analysis for identifying high integrity bovine BACs.

scientific article

A physical map of the bovine genome

scientific article published in January 2007

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

scientific article published on 03 April 2020

Accuracy of genomic predictions in Bos indicus (Nellore) cattle

scientific article

Accuracy of genotype imputation in Nelore cattle

scientific article

Across-Experiment Transcriptomics of Sheep Rumen Identifies Expression of Lipid/Oxo-Acid Metabolism and Muscle Cell Junction Genes Associated With Variation in Methane-Related Phenotypes

article

An entropy-reducing data representation approach for bioinformatic data

scientific article published in January 2018

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in [...]

scientific article (publication date: 24 April 2009)

An ovine hepatorenal fibrocystic model of a Meckel-like syndrome associated with dysmorphic primary cilia and TMEM67 mutations

scientific article

Animal board invited review: genetic possibilities to reduce enteric methane emissions from ruminants

scientific article

Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population

scientific article published on 23 September 2016

Autoradiographic localisation of [3H]-SCH23390 and [3H]-spiperone binding sites in honey bee brain.

scientific article

Bone density in sheep: genetic variation and quantitative trait loci localisation.

scientific article published in October 2003

Breeding sheep in New Zealand that are less reliant on anthelmintics to maintain health and productivity.

scientific article

Brown adipose tissue in lean and fat selection lines of sheep identified by immunodetection of uncoupling protein in western blots of tissue homogenates

scientific article published on 01 January 1989

Carcass composition and meat quality differences between pasture-reared ewe and ram lambs

scientific article published on 02 June 2005

Catalase gene is associated with facial eczema disease resistance in sheep

scientific article published on 01 August 1999

Characterization of an X-chromosomal non-mosaic monosomy (59, X0) dairy heifer detected using routinely available single nucleotide polymorphism genotype data

scientific article

Comparative mapping of sheep chromosome 2q

scientific article published on 01 January 2007

Consistent divergence times and allele sharing measured from cross-species application of SNP chips developed for three domestic species

article

Construction of relatedness matrices using genotyping-by-sequencing data.

scientific article

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

scientific article

Copy number variants in the sheep genome detected using multiple approaches

scientific article

Correction: Design and Characterization of a 52K SNP Chip for Goats

scientific article published on 24 March 2016

Design and characterization of a 52K SNP chip for goats

scientific article published on 22 January 2014

Development of an in situ procedure to evaluate the reticulo-rumen morphology of sheep selected for divergent methane emissions

scientific article published on 24 July 2018

Discovery of quantitative trait loci for resistance to parasitic nematode infection in sheep: I. Analysis of outcross pedigrees.

scientific article published on 18 July 2006

Distribution of prion protein genotypes in breeds of sheep in New Zealand.

scientific article

Early stages of myogenesis in a large mammal: formation of successive generations of myotubes in sheep tibialis cranialis muscle

scientific article published on 01 October 1992

Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

scientific article

Estimates of genetic parameters for breech strike and potential indirect indicators in sheep

scientific article published on 19 January 2015

Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

scientific article

Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data

scientific article published on 07 October 2019

Exclusion probabilities for pedigree testing farm animals

scientific article published on 01 June 1996

Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle

scientific article

Expression of genes for appetite-regulating peptides in the hypothalamus of genetically selected lean and fat sheep.

scientific article published on 25 November 2009

Fatty acid synthase effects on bovine adipose fat and milk fat

scientific article published on 22 January 2007

GBS Data Identify Pigmentation-Specific Genes of Potential Role in Skin-Photosensitization in Two Tunisian Sheep Breeds

scientific article published on 18 December 2019

Gene expression profiling of naïve sheep genetically resistant and susceptible to gastrointestinal nematodes

scientific article

Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production

scientific article published on 14 December 2016

Generation of a preliminary bovine gene atlas, using expression clustering to annotate gene function.

scientific article

Genetic analysis and genomic selection of stayability and productive life in New Zealand ewes.

scientific article published on July 2015

Genetic characterisation of protective vaccine responses in sheep using multi-valent Dichelobacter nodosus vaccines.

scientific article

Genetic diversity of a New Zealand multi-breed sheep population and composite breeds' history revealed by a high-density SNP chip.

scientific article

Genetic parameters for predicted methane production and laser methane detector measurements.

scientific article

Genetic parameters for production traits in New Zealand dual-purpose sheep, with an emphasis on dagginess

scientific article published on 18 November 2011

Genetic parameters of methane emissions determined using portable accumulation chambers in lambs and ewes grazing pasture and genetic correlations with emissions determined in respiration chambers

scientific article published on 01 July 2018

Genetic parameters of plasma and ruminal volatile fatty acids in sheep fed alfalfa pellets and genetic correlations with enteric methane emissions1

scientific article published on 01 July 2019

Genetic relationships between dagginess, breech bareness, and wool traits in New Zealand dual-purpose sheep

scientific article published on 26 July 2013

Genetic variation in skin traits in New Zealand lambs

scientific article published in 2022

Genetically resistant sheep avoid parasites to a greater extent than do susceptible sheep

scientific article published on 01 August 2007

Genome-wide DNA methylation analysis: no evidence for stable hemimethylation in the sheep muscle genome

scientific article published on 6 February 2015

Genome-wide DNA methylation patterns and transcription analysis in sheep muscle

scientific article

Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection

scientific article (publication date: February 2012)

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

article

Genome-wide mapping of loci explaining variance in scrotal circumference in Nellore cattle

scientific article

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

scientific article

Genomic Tools for the Identification of Loci Associated with Facial Eczema in New Zealand Sheep

scientific article published on 30 September 2021

Genomic breed prediction in New Zealand sheep.

scientific article

Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep

scientific article published on 17 November 2015

Genomic prediction of breeding values in the New Zealand sheep industry using a 50K SNP chip.

scientific article published on 22 August 2014

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition.

scientific article

Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō

scientific article published on 31 August 2021

Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white-chinned petrel

scientific article published on 21 October 2019

Growth hormone and ghrelin receptor genes are differentially expressed between genetically lean and fat selection lines of sheep.

scientific article published in February 2006

Heritability estimates of methane emissions from sheep.

scientific article

Heritability of ram mating success in multi-sire breeding situations

scientific article published on 22 October 2018

Highly prolific Booroola sheep have a mutation in the intracellular kinase domain of bone morphogenetic protein IB receptor (ALK-6) that is expressed in both oocytes and granulosa cells.

scientific article published in April 2001

Identifying genes for intestinal nematode resistance using transcriptional profiling

scientific article published on 01 January 2008

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.

scientific article published on 18 September 2013

Inference of transcriptional regulation using gene expression data from the bovine and human genomes

scientific article

Infertility due to bilateral ovarian hypoplasia in sheep homozygous (FecXI FecXI) for the Inverdale prolificacy gene located on the X chromosome

scientific article published on 01 April 1992

Investigations into the GDF8 g+6723G-A polymorphism in New Zealand Texel sheep.

scientific article published on 27 February 2009

Large animal models of rare genetic disorders: sheep as phenotypically relevant models of human genetic disease

scientific article

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data.

scientific article published on 27 March 2018

Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip

scientific article published on 17 July 2014

Meat quality traits were unaffected by a quantitative trait locus affecting leg composition traits in Texel sheep

scientific article published on 01 December 2005

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

scientific article

Molecular evolution of the Bovini tribe (Bovidae, Bovinae): is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

scientific article

Myosin heavy chain composition of single fibres and their origins and distribution in developing fascicles of sheep tibialis cranialis muscles

scientific article published on 01 October 1992

Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type.

scientific article published on 26 January 2016

Neural control of the sequence of expression of myosin heavy chain isoforms in foetal mammalian muscles.

scientific article

On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

scientific article published on 14 May 2020

Ovine keratome: identification, localisation and genomic organisation of keratin and keratin-associated proteins

scientific article published on 30 July 2018

Ovine rumen papillae biopsy via oral endoscopy; a rapid and repeatable method for serial sampling

scientific article published on 7 December 2015

Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)

scientific article (publication date: 24 April 2009)

Physical mapping of the stearoyl-CoA desaturase (SCD) locus in sheep.

scientific article published in April 2004

Population Connectivity and Traces of Mitochondrial Introgression in New Zealand Black-Billed Gulls (Larus bulleri)

article

Prediction of genomic breeding values for growth, carcass and meat quality traits in a multi-breed sheep population using a HD SNP chip

scientific article

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

scientific article (publication date: 3 November 2009)

SNPs for parentage testing and traceability in globally diverse breeds of sheep

scientific article

Sheep from low-methane-yield selection lines created on alfalfa pellets also have lower methane yield under pastoral farming conditions.

scientific article

Signatures of selection in sheep bred for resistance or susceptibility to gastrointestinal nematodes

scientific article

Testing the neutral theory of molecular evolution using genomic data: a comparison of the human and bovine transcriptome

scientific article published on 26 April 2006

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The locus for an inherited cataract in sheep maps to ovine chromosome 6.

scientific article

The physiological effects of natural variation in growth hormone gene copy number in ram lambs.

scientific article published in November 1997

The sheep genome illuminates biology of the rumen and lipid metabolism

scientific article

The sheep genome reference sequence: a work in progress

scientific article

Towards genomic selection for facial eczema disease tolerance in the New Zealand sheep industry.

scientific article published on 7 May 2014

Transcriptional profiling of Ovis aries identifies Ovar-DQA1 allele frequency differences between nematode-resistant and susceptible selection lines

scientific article published on 08 May 2007

Two different bacterial community types are linked with the low-methane emission trait in sheep

scientific article (publication date: 2014)

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

scientific article

Using genotyping-by-sequencing to predict gender in animals

scientific article published on 07 April 2019

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