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List of works by Nils Gehlenborg

A systems approach to prion disease

scientific article

AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research.

scientific article

Abstracts of the Fourth International Society for Computational Biology (ISCB) Student Council Symposium. Toronto, Canada. July 18, 2008

article

An information retrieval perspective on visualization of gene expression data with ontological annotation

article

Bar charts and box plots

scientific article published on 01 February 2014

Characterization of HPV and host genome interactions in primary head and neck cancers

scientific article

Comparative analysis of metazoan chromatin organization

scientific article

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

article

Comprehensive Characterization of Cancer Driver Genes and Mutations

article

DRAVA: Aligning Human Concepts with Machine Learning Latent Dimensions for the Visual Exploration of Small Multiples

scientific article published on 20 April 2023

Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma

scientific article

Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes ⬇️

scientific article published on May 9, 2013

Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.

scientific article

Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery

scientific article published on 29 April 2022

From Visual Exploration to Storytelling and Back Again

scientific article

Gos: a declarative library for interactive genomics visualization in Python

scientific article published in 2023

Guided visual exploration of genomic stratifications in cancer

scientific article

Guidelines for reporting single-cell RNA-seq experiments

scientific article published on 13 November 2020

HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps

HiGlass: web-based visual exploration and analysis of genome interaction maps

scientific article published on 24 August 2018

International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study

scientific article published on 11 October 2021

International Electronic Health Record-Derived COVID-19 Clinical Course Profiles: The 4CE Consortium

scientific article published on 18 April 2020

Into the third dimension

scientific article published on 01 September 2012

LineUp: visual analysis of multi-attribute rankings

scientific article

Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs

scientific article published on 06 March 2018

MITI minimum information guidelines for highly multiplexed tissue images

scientific article published on 01 March 2022

Mayday--a microarray data analysis workbench

scientific article published on 24 February 2006

Nozzle: a report generation toolkit for data analysis pipelines

scientific article

OME-Zarr: a cloud-optimized bioimaging file format with international community support

scientific article published in 2023

Ontologies in biological data visualization

scientific article

Points of View: Heat maps

scientific article published on March 2012

Points of view: Integrating data.

scientific article

Points of view: Mapping quantitative data to color.

scientific article

Points of view: Networks

scientific article published on 01 February 2012

Power of the plane

scientific article published on 01 October 2012

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

scientific article

Probabilistic retrieval and visualization of biologically relevant microarray experiments

scientific article published on June 2009

Response to "Plotting intersections" by Lentini

scientific article

Tasks, Techniques, and Tools for Genomic Data Visualization

scientific article published on 01 June 2019

Ten simple rules for organizing a scientific meeting

scientific article (publication date: 27 June 2008)

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

scientific article published on 02 May 2022

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

article

UBiT2: a client-side web-application for gene expression data analysis

article

UpSet: Visualization of Intersecting Sets.

scientific article

Visualization of large microarray experiments with space maps

Visualization of omics data for systems biology

scientific article

Visualizing biological data-now and in the future

scientific article

Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

scientific article published on 11 May 2022

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