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List of works by Steven D Brown

A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies

scientific article published on 18 July 2017

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum

scientific article

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

BESC knowledgebase public portal.

scientific article published on 11 January 2012

Bacterial Differential Expression Analysis Methods

scientific article published on 01 January 2020

Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments.

scientific article published on 17 November 2017

Cellular response of Shewanella oneidensis to strontium stress

scientific article published in January 2006

Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia.

scientific article published on 5 May 2015

Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways

scientific article published on 5 May 2013

Characterization of archaeal community in contaminated and uncontaminated surface stream sediments

scientific article

Clostridium autoethanogenum isopropanol production via native plasmid pCA replicon

scientific article published in 2022

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress

scientific article

Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation.

scientific article

Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.

scientific article published on 12 September 2013

Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A.

scientific article

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

scientific article

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum

scientific article

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.

scientific article published on 17 June 2011

Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.

scientific article

Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans

scientific article

Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray.

scientific article published on April 2007

Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination

scientific article

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment

scientific article published on 15 July 2016

Draft Genome Sequence for Caulobacter sp. Strain OR37, a Bacterium Tolerant to Heavy Metals

scientific article published on 27 June 2013

Draft Genome Sequence for Desulfovibrio africanus Strain PCS.

scientific article published on March 2013

Draft Genome Sequence for Ralstonia sp. Strain OR214, a Bacterium with Potential for Bioremediation

scientific article published on 27 June 2013

Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles.

scientific article published on 12 December 2013

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere

scientific article

Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.

scientific article

Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction

scientific article

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

scientific article

Draft genome sequence of the polycyclic aromatic hydrocarbon-degrading, genetically engineered bioluminescent bioreporter Pseudomonas fluorescens HK44.

scientific article

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

scientific article

Draft genome sequences for three mercury-methylating, sulfate-reducing bacteria.

scientific article published on 15 August 2013

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7

scientific article

Effects of engineered cerium oxide nanoparticles on bacterial growth and viability

scientific article

Ethanol-tolerant gene identification in Clostridium thermocellum using pyro-resequencing for metabolic engineering

scientific article published on 01 January 2012

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

scientific article

Genome Sequence of Halomonas sp. Strain KO116, an Ionic Liquid-Tolerant Marine Bacterium Isolated from a Lignin-Enriched Seawater Microcosm

scientific article published on 7 May 2015

Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives

scientific article published on 27 June 2013

Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.

scientific article

Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132

scientific article

Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities

scientific article

Genome-scale resources for Thermoanaerobacterium saccharolyticum

scientific article published on 26 June 2015

Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

scientific article

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

scientific article

Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass

scientific article published on 02 December 2013

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities

scientific article

Improved Draft Genome Sequence of Clostridium pasteurianum Strain ATCC 6013 (DSM 525) Using a Hybrid Next-Generation Sequencing Approach

scientific article

Improved genome annotation for Zymomonas mobilis

article published in 2009

Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates.

scientific article

Integrative analysis of transcriptomic and proteomic data of Shewanella oneidensis: missing value imputation using temporal datasets.

scientific article

Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams

scientific article

Mercury methylation by novel microorganisms from new environments

scientific article

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

scientific article

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization

scientific article published on 01 May 2014

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp

scientific article published on 20 January 2012

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

scientific article (publication date: 16 August 2011)

Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum

scientific article published on 27 August 2011

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

scientific article

New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20

scientific article

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

scientific article

Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose.

scientific article

Rex in Caldicellulosiruptor bescii: Novel regulon members and its effect on the production of ethanol and overflow metabolites

scientific article published on 23 May 2018

Role of morphological growth state and gene expression in Desulfovibrio africanus strain Walvis Bay mercury methylation

scientific article published on 20 April 2012

Sequencing intractable DNA to close microbial genomes

scientific article

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation

scientific article

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

scientific article

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

scientific article published on 23 January 2017

The NifA-RpoN regulon of Mesorhizobium loti strain R7A and its symbiotic activation by a novel LacI/GalR-family regulator

scientific article

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors

scientific article

The genetic basis for bacterial mercury methylation

scientific article

Thermophilic lignocellulose deconstruction

scientific article

Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.

scientific article

Transcriptomic Profiles of Zymomonas mobilis 8b to Furfural Acute and Long-Term Stress in Both Glucose and Xylose Conditions

scientific article published on 23 January 2020

Transcriptomic analysis of Clostridium thermocellum Populus hydrolysate-tolerant mutant strain shows increased cellular efficiency in response to Populus hydrolysate compared to the wild type strain

scientific article

Transcriptomic analysis of Clostridium thermocellumATCC 27405 cellulose fermentation ⬇️

scientific article published on June 14, 2011

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

scientific article

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

scientific article

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system

scientific article published on 7 September 2017

Zymomonas mobilis as a model system for production of biofuels and biochemicals

scientific article

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