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List of works by Michael J. Donoghue

A Bayesian approach for evaluating the impact of historical events on rates of diversification

scientific article (publication date: 17 March 2009)

A Critique of the Biological Species Concept and Recommendations for a Phylogenetic Alternative

scientific article published in 1985

A Likelihood Framework for Inferring the Evolution of Geographic Range on Phylogenetic Trees

article

A New Age of Discovery

article

A Preliminary Analysis of Phylogenetic Relationships in Viburnum (Caprifoliaceae s.1.)

scientific article published in 1983

A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana ⬇️

scientific article (publication date: 8 April 2013)

A chloroplast tree for Viburnum (Adoxaceae) and its implications for phylogenetic classification and character evolution

scientific article

A phylogenomic analysis of <i>Lonicera</i> and its bearing on the evolution of organ fusion

scientific article published in 2023

Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers

scientific article published on 09 October 2019

Adaptation meets dispersal: legumes in the land of succulents

scientific article published on 20 April 2019

Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms

scientific article published on 30 May 2003

Allopolyploid speciation in Persicaria (Polygonaceae): insights from a low-copy nuclear region ⬇️

scientific article (publication date: 26 August 2008)

An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

scientific article (publication date: 30 March 2010)

Angiosperm family pairs: preliminary phylogenetic analyses

scientific article published in 1994

Angiosperm phylogeny: 17 genes, 640 taxa

scientific article

Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms

scientific article

Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form ⬇️

scientific article published on July 1, 2005

Bioactive endophytes warrant intensified exploration and conservation

scientific article

Biome Shifts and Niche Evolution in Plants

scientific article published on 08 October 2014

Characterization of 16 microsatellite markers for the Oreinotinus clade of Viburnum (Adoxaceae).

scientific article

Characters, Computers, and Cladograms: A Review of the Berkeley Cladistics Workshop

scientific article published in October 1981

Choosing among Alternative "Phylogenetic" Species Concepts

article published in 1995

Climate change and the integrity of science

scientific article

Climate, niche evolution, and diversification of the "bird-cage" evening primroses (Oenothera, sections Anogra and Kleinia).

scientific article published in February 2009

Colloquium paper: a phylogenetic perspective on the distribution of plant diversity

scientific article (publication date: 12 August 2008)

Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales).

scientific article published on 22 March 2010

Cone size is related to branching architecture in conifers

scientific article published on 29 May 2014

Confluence, synnovation, and depauperons in plant diversification

scientific article

Convergence, Consilience, and the Evolution of Temperate Deciduous Forests

scientific article

Convergent phylogenetic and functional responses to altered fire regimes in mesic savanna grasslands of North America and South Africa

scientific article

Correlates of diversification in the plant clade Dipsacales: geographic movement and evolutionary innovations

scientific article

Correlation, causation, and the evolution of leaf teeth: A reply to Givnish and Kriebel

scientific article

DIPSACALES PHYLOGENY BASED ON CHLOROPLAST DNA SEQUENCES

scientific article published in 2001

Dark and disturbed: a new image of early angiosperm ecology

scientific article (publication date: 2004)

Dating the Dipsacales: comparing models, genes, and evolutionary implications ⬇️

scientific article published on February 1, 2005

Differences in flowering time maintain species boundaries in a continental radiation of Viburnum

scientific article published on 23 May 2019

Different clades and traits yield similar grassland functional responses

scientific article published on 10 January 2017

Dissolution of<i>Viburnum</i>Section<i>Megalotinus</i>(Adoxaceae) of Southeast Asia and Its Implications for Morphological Evolution and Biogeography

scientific article published in 2011

Diversification in evolutionary arenas – assessment and synthesis

Diversification in evolutionary arenas-Assessment and synthesis

scientific article published on 19 May 2020

Diversification of CYCLOIDEA expression in the evolution of bilateral flower symmetry in Caprifoliaceae and Lonicera (Dipsacales) ⬇️

scientific article published on April 7, 2011

Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences ⬇️

scientific article published on November 6, 2011

Doubtful pathways to cold tolerance in plants

scientific article

Duplications and Expression of<i>RADIALIS</i>-Like Genes in Dipsacales

scientific article published in 2012

Duplications and expression of DIVARICATA-like genes in dipsacales

scientific article published on 16 March 2009

Duplications in<i>CYC</i>‐like Genes from Dipsacales Correlate with Floral Form

scientific article published in 2005

Evolution and Phylogenetic Importance of Endocarp and Seed Characters in Viburnum (Adoxaceae)

scholarly article by Bart Jacobs et al published March 2008 in International Journal of Plant Sciences

Evolution of leaf form correlates with tropical-temperate transitions in Viburnum (Adoxaceae)

scientific article (publication date: 7 October 2012)

Evolutionary biology in biodiversity science, conservation, and policy: a call to action

scientific article

Evolutionary dynamics of genome size in a radiation of woody plants

scientific article published on 20 October 2020

Evolutionary history predicts plant defense against an invasive pest ⬇️

scientific article

Evosystem services: an evolutionary perspective on the links between biodiversity and human well-being

Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae) ⬇️

scientific article published on January 25, 2012

Experiments and Hypotheses in Systematics

scientific article (publication date: August 1987)

Explaining the distribution of breeding and dispersal syndromes in conifers

scientific article (publication date: 7 November 2013)

Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests

scientific article published on February 2005

Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera).

scientific article

Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes ⬇️

scientific article published on July 1, 1997

Fossils and Seed Plant Phylogeny Reanalyzed

article

Fruit evolution and diversification in campanulid angiosperms

scientific article

Functional differences between dominant grasses drive divergent responses to large herbivore loss in mesic savanna grasslands of North America and South Africa

scientific article published on 25 January 2015

Functional traits, the phylogeny of function, and ecosystem service vulnerability

scientific article

Future Benefits from Contemporary Evosystem Services: A Response to Rudman et al.

scientific article published on 10 August 2017

Hemisphere-scale differences in conifer evolutionary dynamics

scientific article (publication date: 2 October 2012)

Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms

scientific article published on 4 May 2015

Historical biogeography of the endemic Campanulaceae of Crete

scholarly article by Nicoletta Cellinese et al published July 2009 in Journal of Biogeography

Historical biogeography, ecology and species richness

scientific article (publication date: December 2004)

Homoplasy and Developmental Constraint: A Model and an Example from Plants

scientific article published on 13 March 2006

How colorful are fruits? Limited color diversity in fleshy fruits on local and global scales

scientific article

Hydraulic basis for the evolution of photosynthetic productivity

scientific article published on 27 May 2016

Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms

scientific article

Implementing the PhyloCode

scientific article (publication date: June 2004)

Implications of lemuriform extinctions for the Malagasy flora

scientific article

Incongruence between cpDNA and nrITS trees indicates extensive hybridization within Eupersicaria (Polygonaceae) ⬇️

scientific article published on September 1, 2008

Increasing data transparency and estimating phylogenetic uncertainty in supertrees: Approaches using nonparametric bootstrapping

scientific article published in August 2006

Inferring Rates of Change in Flower Symmetry in Asterid Angiosperms

scientific article published in 1999

Integrating phylogenetic analysis and classification in fungi

scientific article published in May 1998

Integration and macroevolutionary patterns in the pollination biology of conifers

scientific article

Integration of Morphological and Ribosomal RNA Data on the Origin of Angiosperms

article by James A. Doyle et al published 1994 in Annals of the Missouri Botanical Garden

Is it easy to move and easy to evolve? Evolutionary accessibility and adaptation ⬇️

scientific article published on August 3, 2013

John H. Beaman—Recipient of the 2004 Asa Gray Award

article by Lynn G. Clark & Michael J. Donoghue published 1 January 2005 in Systematic Botany

Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum

scientific article published on 08 April 2020

Key innovations, convergence, and success: macroevolutionary lessons from plant phylogeny

article

Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae

scientific article

Leaf Form Evolution in Viburnum Parallels Variation within Individual Plants

scientific article published on 8 December 2017

Leaf life span and the leaf economic spectrum in the context of whole plant architecture

scientific article published on 20 February 2014

Long-term morphological stasis maintained by a plant-pollinator mutualism

scientific article (publication date: 22 April 2014)

MORE MOLECULAR EVIDENCE FOR INTERSPECIFIC RELATIONSHIPS IN LIQUIDAMBAR (HAMAMELIDACEAE)

scientific article published in 1999

Maximising Synergy among Tropical Plant Systematists, Ecologists, and Evolutionary Biologists ⬇️

scientific article

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

scientific article

Mitochondrial sequence data and Dipsacales phylogeny: mixed models, partitioned Bayesian analyses, and model selection

scientific article

Model clades are vital for comparative biology, and ascertainment bias is not a problem in practice: a response to Beaulieu and O'Meara (2018)

scientific article published on 18 March 2019

Modeling phylogenetic biome shifts on a planet with a past

scientific article published on 08 June 2020

Molecular Phylogeny and Biogeography of Ribes (Grossulariaceae), with an Emphasis on Gooseberries (subg. Grossularia)

scholarly article by Lisa M. Schultheis & Michael J. Donoghue published 1 January 2004 in Systematic Botany

Molecular phylogeny of Persicaria (Persicarieae, Polygonaceae)

scientific article published in March 2008

Molecular systematics and character evolution in Caryophyllaceae

scientific article published on December 2011

Molecular systematics and character evolution in Caryophyllaceae

scientific article published on 19 February 2019

Monophyly of Aneuploid Astragalus (Fabaceae): Evidence from Nuclear Ribosomal DNA Internal Transcribed Spacer Sequences

article

On the resurrection of Persicaria puritanorum (Polygonaceae)

article

Outgroup Analysis and Parsimony

article

PHYLOGENETIC RELATIONSHIPS AND BIOGEOGRAPHY OF STEWARTIA (CAMELLIOIDEAE, THEACEAE) INFERRED FROM NUCLEAR RIBOSOMAL DNA ITS SEQUENCES

scholarly article by Jianhua Li et al published 2002 in Rhodora

PHYLOGENETIC RELATIONSHIPS IN THE HAMAMELIDOIDEAE INFERRED FROM SEQUENCES OF TRN NON-CODING REGIONS OF CHLOROPLAST DNA

scientific article published in 1999

PHYLOGENETIC RELATIONSHIPS OF TORREYA (TAXACEAE) INFERRED FROM SEQUENCES OF NUCLEAR RIBOSOMAL DNA ITS REGION

scientific article published in 2001

PHYLOGENETIC SYSTEMATICS AND THE SPECIES PROBLEM

article

PHYLOGENETICS OF BUCKLEYA (SANTALACEAE) BASED ON ITS SEQUENCES OF NUCLEAR RIBOSOMAL DNA

scholarly article by Jianhua Li et al published 2001 in Rhodora

PHYLOGENIES AND THE ANALYSIS OF EVOLUTIONARY SEQUENCES, WITH EXAMPLES FROM SEED PLANTS.

scientific article published in September 1989

PHYLOGENY AND BIOGEOGRAPHY OF CHAMAECYPARIS (CUPRESSACEAE) INFERRED FROM DNA SEQUENCES OF THE NUCLEAR RIBOSOMAL ITS REGION

scholarly article by Jianhua Li et al published 2003 in Rhodora

PHYLOGENY AND BIOGEOGRAPHY OF HAMAMELIS (HAMAMELIDACEAE)

scientific article published in 2000

PHYLOGENY AND BIOGEOGRAPHY OF TAXUS (TAXACEAE) INFERRED FROM SEQUENCES OF THE INTERNAL TRANSCRIBED SPACER REGION OF NUCLEAR RIBOSOMAL DNA

scientific article published in 2001

PHYLOGENY AND BIOGEOGRAPHY OF TRIOSTEUM (CAPRIFOLIACEAE)

scientific article published in 2000

PHYLOGENY AND PHYLOGENETIC TAXONOMY OF DIPSACALES, WITH SPECIAL REFERENCE TO SINADOXA AND TETRADOXA (ADOXACEAE)

scientific article published in 2001

POLLEN DIVERSITY AND EXINE EVOLUTION IN VIBURNUM AND THE CAPRIFOLIACEAE SENSU LATO

scientific article published in 1985

Parallelism in Endocarp Form Sheds Light on Fruit Syndrome Evolution in <i>Viburnum</i>

scientific article published in 2021

Patterns in the assembly of temperate forests around the Northern Hemisphere

scientific article (publication date: 29 October 2004)

Pereskia and the Origin of the Cactus Life‐Form

scientific article published in 2006

Pereskia and the origin of the cactus life-form

scientific article published on 28 April 2006

Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest

scientific article published in July 2006

Phylogenetic Relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) Based on Nuclear Ribosomal ITS Sequences and Preliminary Morphological Data

scholarly article by Torsten Eriksson & Michael J. Donoghue published July 1997 in Systematic Botany

Phylogenetic Relationships, Taxonomy, and Morphological Evolution in Dipsacaceae (Dipsacales) inferred by DNA Sequence Data

scientific article published on November 2009

Phylogenetic analysis of the "ECE" (CYC/TB1) clade reveals duplications predating the core eudicots

scholarly article

Phylogenetic and Experimental Tests of Interactions among Mutualistic Plant Defense Traits in Viburnum (Adoxaceae) ⬇️

scientific article published on August 22, 2012

Phylogenetic diversity in shiitake inferred from nuclear ribosomal DNA sequences

scientific article published in September 1995

Phylogenetic nomenclature, hierarchical information, and testability

scientific article

Phylogenetic nomenclature, three-taxon statements, and unnecessary name changes

scientific article

Phylogenetic relationships of cantharelloid and clavarioid Homobasidiomycetes based on mitochondrial and nuclear rDNA sequences

scientific article published in November 1999

Phylogenetics of the Caprifolieae and Lonicera (Dipsacales) Based on Nuclear and Chloroplast DNA Sequences

scholarly article by Nina Theis et al published 1 October 2008 in Systematic Botany

Phylogenies and Community Ecology

scholarly article by Campbell O. Webb et al published November 2002 in Annual Review of Ecology, Evolution, and Systematics

Phylogenomic Insights into the Independent Origins of Sterile Marginal Flowers in <i>Viburnum</i>

scientific article published in 2021

Phylogeny and Biogeography of Cercis (Fabaceae): Evidence from Nuclear Ribosomal ITS and Chloroplast ndhF Sequence Data

scientific article published in 2002

Phylogeny and Biogeography of Tsuga (Pinaceae) Inferred from Nuclear Ribosomal ITS and Chloroplast DNA Sequence Data

scholarly article by Nathan P. Havill et al published 1 July 2008 in Systematic Botany

Phylogeny and Ecology Reconsidered

scientific article published on 17 June 2006

Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa

article

Phylogeny of the Coneflowers and Relatives (Heliantheae: Asteraceae) Based on Nuclear rDNA Internal Transcribed Spacer (ITS) Sequences and Chlorplast DNA Restriction Site Data

scholarly article by Lowell E. Urbatsch et al published July 2000 in Systematic Botany

Phylogeography of a widespread eastern North American shrub, Viburnum lantanoides

scientific article published on 12 March 2019

Plant height and hydraulic vulnerability to drought and cold.

scientific article published on 2 July 2018

Polarity Assessment in Phylogenetic Systematics: A Response to Meacham

scientific article (publication date: August 1986)

Publisher Correction: Replicated radiation of a plant clade along a cloud forest archipelago

correction of a scholarly article

Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae).

scientific article published on 15 June 2018

Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights

scientific article published in 2021

Recreating a functional ancestral archosaur visual pigment

scientific article (publication date: September 2002)

Replicated radiation of a plant clade along a cloud forest archipelago

scientific article published in 2022

Restriction-Site-Associated DNA Sequencing Reveals a Cryptic Viburnum Species on the North American Coastal Plain

scientific article published on 01 March 2019

Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach

article

Species Concepts: A Case for Pluralism

Sterile marginal flowers increase visitation and fruit set in the hobblebush (Viburnum lantanoides, Adoxaceae) at multiple spatial scales

scientific article published on 01 January 2019

Structure and Function of Tracheary Elements in Amborella trichopoda

article published in 2000

Synthesizing phylogenetic knowledge for ecological research

scientific article published on 03 August 2012

Temperate radiations and dying embers of a tropical past: the diversification of Viburnum

scientific article published on 03 February 2015

The Evolution of Photosynthetic Anatomy in <i>Viburnum</i> (Adoxaceae)

scientific article published in 2013

The Logic and Limitations of the Outgroup Substitution Approach to Cladistic Analysis

scientific article published in 1984

The Paucity of Frugivores in Madagascar May Not Be Due to Unpredictable Temperatures or Fruit Resources

scientific article

The Phylogeny of Rosoideae (Rosaceae) Based on Sequences of the Internal Transcribed Spacers (ITS) of Nuclear Ribosomal DNA and thetrnL/FRegion of Chloroplast DNA

scientific article (publication date: March 2003)

The biogeographic origin of a radiation of trees in Madagascar: implications for the assembly of a tropical forest biome

scientific article

The historical biogeography of Scabiosa (Dipsacaceae): implications for Old World plant disjunctions

scientific article published on 18 January 2012

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

scientific article published in 2011

The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny

article

The relevance of phylogeny to studies of global change

scientific article

The root of the angiosperms revisited

scientific article

The small-world dynamics of tree networks and data mining in phyloinformatics

scientific article

Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales

scientific article published on February 2008

Toward an Integrative Historical Biogeography ⬇️

scientific article published on 01 April 2003

Towards a phylogenetic nomenclature of Tracheophyta ⬇️

scientific article (publication date: August 2007)

Understanding angiosperm diversification using small and large phylogenetic trees ⬇️

scientific article published on March 2, 2011

Unpacking a century-old mystery: Winter buds and the latitudinal gradient in leaf form

scientific article published on 24 May 2016

Viburnum Phylogeny Based on Chloroplast trnK Intron and Nuclear Ribosomal ITS DNA Sequences

scholarly article by Michael J. Donoghue et al published 1 January 2004 in Systematic Botany

Viburnum phylogeny based on combined molecular data: implications for taxonomy and biogeography ⬇️

scientific article published on April 1, 2005

Viburnum phylogeny: evidence from the duplicated nuclear gene GBSSI

scientific article published on 01 October 2004

Viburnum tinus Fruits Use Lipids to Produce Metallic Blue Structural Color

scientific article published on 29 July 2020

Walter Zimmermann and the Growth of Phylogenetic Theory

scholarly article by Michael J. Donoghue & Joachim Walter Kadereit published March 1992 in Systematic Biology

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