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List of works by Shihui Yang

A split protease-E. coli ClpXP system quantifies protein–protein interactions in Escherichia coli cells

scientific article published in 2021

Advances and prospects in metabolic engineering of Zymomonas mobilis

scientific article published on 5 April 2018

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum

scientific article

Characterization and repurposing of the endogenous Type I-F CRISPR-Cas system of Zymomonas mobilis for genome engineering

scientific article published on 01 December 2019

Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.

scientific article published on 12 September 2013

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032.

scientific article

Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator.

scientific article

De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq

scientific article

Determination of Nucleotide Sequences within Promoter Regions Affecting Promoter Compatibility between <i>Zymomonas mobilis</i> and <i>Escherichia coli</i>

scientific article published in 2022

Development and characterization of acidic-pH-tolerant mutants of Zymomonas mobilis through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq

scientific article published on 13 August 2020

Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

scientific article published on 04 December 2021

Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities.

scientific article published on 5 February 2016

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

scientific article (publication date: 2014)

Enhanced Production of Poly-γ-glutamic acid by Overexpression of the Global Anaerobic Regulator Fnr in Bacillus licheniformis WX-02.

scientific article published in February 2018

Establishment and application of a CRISPR-Cas12a assisted genome-editing system in Zymomonas mobilis

scientific article published on 03 October 2019

Ethanol-tolerant gene identification in Clostridium thermocellum using pyro-resequencing for metabolic engineering

scientific article published on 01 January 2012

Expression and secretion of fungal endoglucanase II and chimeric cellobiohydrolase I in the oleaginous yeast Lipomyces starkeyi.

scientific article

Genome-wide identification of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937.

scientific article

High-level expression and characterization of a novel serine protease in Pichia pastoris by multi-copy integration.

scientific article published on 14 June 2016

Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts

scientific article published on 8 December 2017

Identification and characterization of ethanol-inducible promoters of Zymomonas mobilis based on omics data and dual reporter-gene system

scientific article published on 03 December 2019

Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: implications for the genetic engineering of bioenergy crops

scientific article published on 13 May 2015

Improved genome annotation for Zymomonas mobilis

article published in 2009

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

scientific article

Improving xylose utilization by recombinant Zymomonas mobilis strain 8b through adaptation using 2-deoxyglucose

scientific article published on February 2014

Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates.

scientific article

Investigation of the impact of a broad range of temperatures on the physiological and transcriptional profiles of Zymomonas mobilis ZM4 for high-temperature-tolerant recombinant strain development

scientific article published on 27 June 2021

Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels.

scientific article published on 23 October 2013

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

scientific article

Metabolic engineering of Zymomonas mobilis for anaerobic isobutanol production

scientific article published on 25 January 2020

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

scientific article (publication date: 16 August 2011)

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

scientific article

Proteomic analysis of Chlorella vulgaris: potential targets for enhanced lipid accumulation.

scientific article published on 5 June 2013

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

scientific article

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors

scientific article

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

scientific article

Type III secretion system genes of Dickeya dadantii 3937 are induced by plant phenolic acids

scientific article

Zymomonas mobilis as a model system for production of biofuels and biochemicals

scientific article

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