List of works - Ian Michael Clark

A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale

scientific article published on 18 May 2008

Accessing the soil metagenome for studies of microbial diversity.

scientific article

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota.

scientific article published on 3 September 2015

Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria

article

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

scientific article published in May 2013

Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat

scientific article published in February 2003

Data analysis for 16S microbial profiling from different benchtop sequencing platforms

scientific article

Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting.

scientific article

Development of a defined compost system for the study of plant-microbe interactions

scientific article published on 05 May 2020

Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil.

scientific article

Distribution of environmental mycobacteria in Karonga District, northern Malawi

scientific article

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment

scientific article published on 29 September 2020

Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures.

scientific article published on 22 June 2017

Immunoblot fingerprinting Aspergillus fumigatus

scientific article published on 01 March 1989

Immunoblotting in the diagnosis of culture negative endocarditis caused by streptococci and enterococci.

scientific article published on December 1995

Immunoblotting of streptococcal antigens in guttate psoriasis

scientific article published on 01 February 1993

Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment.

scientific article published in May 2012

Land Management Legacy Affects Abundance and Function of the <i>acdS</i> Gene in Wheat Root Associated Pseudomonads

scientific article published on 27 October 2021

Land use driven change in soil pH affects microbial carbon cycling processes

scientific article published in Nature Communications

Land-use influences phosphatase gene microdiversity in soils.

scientific article

Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome

scientific article

Metagenomic comparison of direct and indirect soil DNA extraction approaches

scientific article published on 25 June 2011

Metatranscriptomic census of active protists in soils

scientific article published on 27 March 2015

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison

scientific article

Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil

scientific article published on 8 November 2017

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

scientific article published on 7 April 2015

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen.

scientific article

Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres.

scientific article published on 14 November 2008

Responses of microbial community from tropical pristine coastal soil to crude oil contamination

scientific article published on 18 February 2016

Soil pH determines microbial diversity and composition in the park grass experiment.

scientific article

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

scientific article

The influence of the symbiotic plasmid pRL1JI on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow

scientific article published on 01 August 2002

Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia

scientific article published on 04 May 2011

Wheat dwarfing influences selection of the rhizosphere microbiome

scientific article published on 29 January 2020

Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes

scientific article

List of works by Ian Michael Clark

A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale

Accessing the soil metagenome for studies of microbial diversity.

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota.

Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat

Data analysis for 16S microbial profiling from different benchtop sequencing platforms

Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting.

Development of a defined compost system for the study of plant-microbe interactions

Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil.

Distribution of environmental mycobacteria in Karonga District, northern Malawi

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment

Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures.

Immunoblot fingerprinting Aspergillus fumigatus

Immunoblotting in the diagnosis of culture negative endocarditis caused by streptococci and enterococci.

Immunoblotting of streptococcal antigens in guttate psoriasis

Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment.

Land Management Legacy Affects Abundance and Function of the <i>acdS</i> Gene in Wheat Root Associated Pseudomonads

Land use driven change in soil pH affects microbial carbon cycling processes

Land-use influences phosphatase gene microdiversity in soils.

Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome

Metagenomic comparison of direct and indirect soil DNA extraction approaches

Metatranscriptomic census of active protists in soils

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison

Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen.

Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres.

Responses of microbial community from tropical pristine coastal soil to crude oil contamination

Soil pH determines microbial diversity and composition in the park grass experiment.

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

The influence of the symbiotic plasmid pRL1JI on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow

Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia

Wheat dwarfing influences selection of the rhizosphere microbiome

Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes