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List of works by Forest Rohwer

2004 ASM Conference on the New Phage Biology: the 'Phage Summit'

scientific article published on 01 March 2005

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

scientific article published on 17 March 2015

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

scientific article

A bacterial metapopulation adapts locally to phage predation despite global dispersal

scientific article

A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains

scientific article

An application of statistics to comparative metagenomics

scientific article published on 20 March 2006

Assessing coral reefs on a Pacific-wide scale using the microbialization score

scientific article

Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers

scientific article

Bacteriophage adhering to mucus provide a non-host-derived immunity.

scientific article

Baselines and degradation of coral reefs in the Northern Line Islands.

scientific article

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

scientific article published in 2018

Biodiversity and Biogeography of Phages in Modern Stromatolites and Thrombolites

scholarly article published 10 November 2011

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

scientific article

Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.

scientific article

Biophysical and physiological processes causing oxygen loss from coral reefs

article published in 2019

Black reefs: iron-induced phase shifts on coral reefs

scientific article

Black reefs: iron-induced phase shifts on coral reefs

scientific article published in 2012

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

scientific article

Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes

scientific article (publication date: 2011)

Can we measure beauty? Computational evaluation of coral reef aesthetics

scientific article published on 10 November 2015

Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung ⬇️

scientific article published on October 6, 2011

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

scientific article

Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

scientific article

Closing the gaps on the viral photosystem-I psaDCAB gene organization

scientific article published on 26 August 2015

Comparative metagenomics of microbial traits within oceanic viral communities

scientific article

Coral Microbiology

scientific article published in 2007

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages ⬇️

scientific article published on January 10, 2013

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

scholarly article by Ana Georgina Cobián Güemes et al published 16 April 2019 in mBio

Cystic Fibrosis Therapy: A Community Ecology Perspective ⬇️

scientific article published on October 25, 2012

Dissecting microbial employment

scientific article published on 01 September 2008

Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals

scientific article

Diversity and population structure of a near-shore marine-sediment viral community

scientific article published in March 2004

Diversity of viral photosystem-I psaA genes ⬇️

scientific article

Ecological networking of cystic fibrosis lung infections

scientific article published on 2 December 2016

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity ⬇️

scientific article published on November 18, 2011

Energetic differences between bacterioplankton trophic groups and coral reef resistance

scientific article published in April 2016

Erratum for Schooley et al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection"

scholarly article by Robert T. Schooley et al published December 2018 in Antimicrobial Agents and Chemotherapy

Erratum: The Microbial Olympics

scholarly article published in Nature Reviews Microbiology

Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome

scientific article published on 8 December 2011

Evolution of TNF-induced apoptosis reveals 550 My of functional conservation.

scientific article

Explaining microbial population genomics through phage predation

scientific article published in November 2009

FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries

scientific article

Finding novel genes in bacterial communities isolated from the environment

article

Functional metagenomic profiling of nine biomes

scientific article (publication date: 3 April 2008)

Functional metagenomic profiling of nine biomes

scientific article published in Nature

Genome Sequences of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C ⬇️

scientific article published on November 1, 2003

Genomic analysis of multiple Roseophage SIO1 strains

scientific article published on 31 July 2009

Genomic analysis of uncultured marine viral communities

scientific article

Global distribution of nearly identical phage-encoded DNA sequences

scientific article

Global microbialization of coral reefs.

scientific article

Global phage diversity

scientific article

Going viral: next-generation sequencing applied to phage populations in the human gut.

scientific article

Grinder: a versatile amplicon and shotgun sequence simulator

scientific article

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

scientific article

Here a virus, there a virus, everywhere the same virus?

scientific article published in June 2005

Hyperspectral and physiological analyses of coral-algal interactions

scientific article

IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells

scientific article published in June 2003

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness

scientific article

In retrospect: A century of phage lessons

scientific article

Influence of coral and algal exudates on microbially mediated reef metabolism

scientific article published on 16 July 2013

Innate and acquired bacteriophage-mediated immunity

scientific article

Knowles &Rohwer reply

scientific article published in September 2017

Laboratory procedures to generate viral metagenomes

scientific article

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

scientific article

Marine Viruses: Community Dynamics, Diversity and Impact on Microbial Processes

article

Marine phage genomics

scientific article

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

scientific article

Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data

scientific article

Metabolic cascades in marine microbial communities

scientific article

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease

scientific article published on 11 August 2016

Metagenomic analyses of an uncultured viral community from human feces

scientific article published in October 2003

Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression

scientific article

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

scientific article

Metagenomic analysis of stressed coral holobionts

scientific article published on 22 April 2009

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

scientific article

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil

scientific article published on 7 September 2007

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

scientific article

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity

scientific article

Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber

scientific article

Metagenomic signatures of 86 microbial and viral metagenomes

scientific article

Metagenomics and future perspectives in virus discovery.

scientific article

Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities ⬇️

scientific article published on August 28, 2012

Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge

scientific article

Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing

scientific article published in November 2005

Microbial communities associated with skeletal tumors on Porites compressa

scientific article

Microbial ecology of four coral atolls in the Northern Line Islands.

scientific article

Movement of viruses between biomes

scientific article published on October 2004

Mucus Distribution Model in a Lung with Cystic Fibrosis ⬇️

scientific article published on October 17, 2012

Multilevel Research Strategies and Biological Systems

article

Multispecies Microbial Mutualisms on Coral Reefs: The Host as a Habitat ⬇️

scientific article published on October 1, 2003

New abundant microbial groups in aquatic hypersaline environments

scientific article

Oxygen minimum zones harbour novel viral communities with low diversity

scientific article

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

scientific article

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins

scientific article

Phage community dynamics in hot springs

scientific article published on March 2004

Phage metagenomics

scientific article published on January 2007

Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks

scientific article published on 26 July 2016

Photosystem I gene cassettes are present in marine virus genomes

scientific article

Phylogenetic classification of short environmental DNA fragments

scientific article (publication date: April 2008)

Power law rankâ abundance models for marine phage communities

article

Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples

scientific article

RNA viral community in human feces: prevalence of plant pathogenic viruses

scientific article published in January 2006

Rapid estimation of microbial numbers in water using bulk fluorescence

scientific article published in October 2006

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific

scientific article

Real-time microbial ecology

scientific article published in January 2007

Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets

scientific article

Roles of viruses in the environment

scientific article published on 01 November 2009

Some of the most interesting CASP11 targets through the eyes of their authors

scientific article

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

scientific article (publication date: 20 December 2016)

Spatial distribution of microbial communities in the cystic fibrosis lung ⬇️

scientific article published on July 28, 2011

Stochastic tracking of infection in a CF lung

scientific article

Stratigraphy of Spring Coulee Well Supplementary Paper

article by William P. Mellen & Forest Rohwer published 1931 in AAPG Bulletin

Structure and function of a cyanophage-encoded peptide deformylase

scientific article

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters

scientific article

Superorganisms and Holobionts

scientific article published in April 2013

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

scientific article

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

scientific article

The Microbial Olympics

scientific article

The Phage Proteomic Tree: a genome-based taxonomy for phage

scientific article

The airborne metagenome in an indoor urban environment

scientific article

The birth of viromics: an interview with Forest Rohwer

article

The marine viromes of four oceanic regions

scientific article

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

scientific article

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung

scientific article published on 17 October 2017

Transfer of photosynthesis genes to and from Prochlorococcus viruses

scientific article

Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology

scientific article

Use of 16S ribosomal DNA for delineation of marine bacterioplankton species

scientific article

Using pyrosequencing to shed light on deep mine microbial ecology

scientific article

Variability and host density independence in inductions-based estimates of environmental lysogeny

scientific article published on 28 April 2017

Viral and microbial community dynamics in four aquatic environments.

scientific article

Viral communities associated with healthy and bleaching corals

scientific article published on 09 May 2008

Viral diversity and dynamics in an infant gut.

scientific article

Viral information ⬇️

scientific article published on October 31, 2012

Viral metagenomics

scientific article

Viruses as Winners in the Game of Life

scientific article published on September 2016

Viruses in the faecal microbiota of monozygotic twins and their mothers

scientific article

Viruses manipulate the marine environment

scientific article

Visualization of oxygen distribution patterns caused by coral and algae ⬇️

scientific article published on July 16, 2013

Widespread association of a Rickettsiales-like bacterium with reef-building corals

scientific article published on 01 November 2004

Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California

scientific article published in August 2006

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