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List of works by Lydie Lane

A Preliminary Study on the Prediction of Human Protein Functions

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

Advances in Identifying and Characterizing the Human Proteome

scientific article published on 01 December 2019

Advances in the Chromosome-Centric Human Proteome Project: looking to the future

scientific article published on 17 October 2017

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge

scientific article published on 18 October 2019

C11orf83, a mitochondrial cardiolipin-binding protein involved in bc1 complex assembly and supercomplex stabilization

scientific article

C21orf91 Regulates Oligodendroglial Precursor Cell Fate-A Switch in the Glial Lineage?

scientific article published on 16 March 2021

C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human

scientific article

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

scientific article (publication date: 2009)

Combining bioinformatics and MS-based proteomics: clinical implications.

scientific article

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

scientific article published on July 2015

Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project"

scientific article published on 25 February 2019

DERA is the human deoxyribose phosphate aldolase and is involved in stress response

scientific article

Deep Dive on the Proteome of Human Cerebrospinal Fluid: A Valuable Data Resource for Biomarker Discovery and Missing Protein Identification

scientific article published on 31 August 2018

Devising a Consensus Framework for Validation of Novel Human Coding Loci

scientific article published on 14 September 2015

Down-regulation of ECRG4, a candidate tumor suppressor gene, in human breast cancer.

scientific article

Evidence for a molecular link between the tuberous sclerosis complex and the Crumbs complex.

scientific article published on 18 January 2007

Exploring the Uncharacterized Human Proteome Using neXtProt

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

scientific article

Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway

scientific article published in 2012

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students

scientific article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

scientific article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

scientific article published on 21 October 2019

Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project

scientific journal article

Identification of Missing Proteins in Normal Human Cerebrospinal Fluid

scientific article published on 17 August 2018

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project

scientific article published on 17 September 2018

Launching the C-HPP pilot project for functional characterization of identified proteins with no known function

scientific article published on 29 November 2018

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

scientific article published on 22 July 2016

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

scientific article published on 18 December 2017

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

scientific article

Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification

scientific article

Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications

scientific article published on 03 August 2016

Missing protein landscape of human chromosomes 2 and 14: Progress and current status

scientific article (publication date: 4 November 2016)

Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly

scientific article published on 11 March 2020

N-terminome analysis of the human mitochondrial proteome.

scientific article published on 08 June 2015

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

scientific article published on 12 May 2016

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project

scientific article published on 23 August 2018

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

scientific article published on 13 September 2019

Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.

scientific article published on 30 August 2017

Protein Function Analysis

Protein variety and functional diversity: Swiss-Prot annotation in its biological context

scientific article

Proteomic analysis of podocyte exosome-enriched fraction from normal human urine

scientific article

Proteomics Standards Initiative Extended FASTA Format

scientific article published on 23 May 2019

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

scientific article

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

scientific article published on 15 June 2015

Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Project

scientific article published on 15 September 2020

Systems Proteomics View of the Endogenous Human Claudin Protein Family

scientific article

The Functionally Unannotated Proteome of Human Male Tissues: A Shared Resource to Uncover New Protein Functions Associated with Reproductive Biology

scientific article published on 16 October 2020

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The UniProtKB/Swiss-Prot knowledgebase and its plant proteome annotation program

scientific article

The neXtProt knowledgebase in 2020: data, tools and usability improvements

scientific article published on 01 January 2020

The neXtProt knowledgebase on human proteins: 2017 update

scientific article (publication date: 29 November 2016)

The neXtProt knowledgebase on human proteins: current status

scientific article

The neXtProt peptide uniqueness checker: a tool for the proteomics community

scientific article published on 17 May 2017

Toward Completion of the Human Proteome Parts List: Progress Uncovering Proteins That Are Missing or Have Unknown Function and Developing Analytical Methods

scientific article published on 01 December 2018

UniProtKB/Swiss-Prot Manual and Automated Annotation of Complete Proteomes: The Dictyostelium discoideum Case Study

article

Update of the Functional Mitochondrial Human Proteome Network

Update of the Functional Mitochondrial Human Proteome Network

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods.

scientific article published on 11 September 2017

What will neXtProt help us achieve in 2020 and beyond?

scientific article published on 25 February 2020

Worming into the Uncharacterized Human Proteome

scientific article published on 24 October 2019

neXtProt: a knowledge platform for human proteins

scientific article

neXtProt: organizing protein knowledge in the context of human proteome projects

scientific article

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