List of works - Kevin L. Childs

A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa

scientific article

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

article by Robert VanBuren et al published 1 August 2018 in GigaScience

A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna

scientific article published on 16 September 2014

A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus ⬇️

scientific article

A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production.

scientific article published on 12 June 2017

Allelic Variation in the Chloroplast Division Gene FtsZ2-2 Leads to Natural Variation in Chloroplast Size

scientific article published on 05 September 2019

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

scientific article

Analysis of salt-induced physiological and proline changes in 46 switchgrass (Panicum virgatum) lines indicates multiple response modes

scientific article

Assessment of drought tolerance of 49 switchgrass (Panicum virgatum) genotypes using physiological and morphological parameters.

scientific article published on 22 September 2015

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes

scientific article published on 10 November 2014

Bovine Genome Database: integrated tools for genome annotation and discovery

scientific article

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

scientific article (publication date: 19 November 2010)

Chromosome-scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus, and Juncus inflexus

scientific article published in 2022

Community annotation: procedures, protocols, and supporting tools.

scientific article published on 25 October 2006

Comparative genomics of Spiraeoideae-infecting Erwinia amylovora strains revealed high genetic diversity and identified the genetic basis of a low virulence strain.

scientific article published on 27 November 2017

Computational and transcriptional evidence for microRNAs in the honey bee genome

scientific article published on January 2007

Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779

scientific article published on 23 May 2017

Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

scientific article

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

scientific article published in November 2016

Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis.

scientific article published on 27 November 2017

Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera

scientific article

Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis

scientific article published on 26 September 2006

Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis

scientific article

Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

scientific article

Fine mapping of the stem rust resistance gene SrTA10187.

scientific article

Gene coexpression network analysis as a source of functional annotation for rice genes

scientific article

Genetic Regulation of Development in Sorghum bicolor: VII. ma(3) Flowering Mutant Lacks a Phytochrome that Predominates in Green Tissue.

scientific article published in June 1992

Genome Sequencing and Transcriptome Analysis of the Hop Downy Mildew Pathogen Pseudoperonospora humuli Reveal Species-Specific Genes for Molecular Detection

scientific article published on 26 June 2019

Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779

scientific article

Genome-guided investigation of plant natural product biosynthesis

scientific article published on 11 April 2015

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

scholarly article

Genomic and genetic database resources for the grasses.

scientific article published on January 2009

Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

scientific article published on 01 March 2019

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

scientific article

Identification and characterization of lineage-specific genes within the Poaceae

scientific article (publication date: December 2007)

Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

scientific article

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

scientific article

Integrated karyotyping of sorghum by in situ hybridization of landed BACs.

scientific article

Isoprene Acts as a Signaling Molecule in Gene Networks Important for Stress Responses and Plant Growth

article

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations

scientific article published on 4 December 2013

Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology

article

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

scientific article

Origin and evolution of the octoploid strawberry genome

scientific article published on 25 February 2019

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination

scientific article published on 7 April 2014

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

scientific article published on 13 December 2017

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

scientific article published on 16 August 2017

The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species ⬇️

scientific article published on January 15, 2012

The Microalga Nannochloropsis during Transition from Quiescence to Autotrophy in Response to Nitrogen Availability

scientific article published on 18 November 2019

The TIGR Plant Transcript Assemblies database

scientific article

The TIGR Rice Genome Annotation Resource: improvements and new features

scientific article published on December 2006

The bowfin genome illuminates the developmental evolution of ray-finned fishes

scientific article published on 30 August 2021

The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.

scientific article

Transcriptional Regulation of the Glucose-6-Phosphate/Phosphate Translocator 2 Is Related to Carbon Exchange Across the Chloroplast Envelope

scientific article published on 27 June 2019

Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize

scientific article

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in

article

List of works by Kevin L. Childs

A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna

A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus ⬇️

A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production.

Allelic Variation in the Chloroplast Division Gene FtsZ2-2 Leads to Natural Variation in Chloroplast Size

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

Analysis of salt-induced physiological and proline changes in 46 switchgrass (Panicum virgatum) lines indicates multiple response modes

Assessment of drought tolerance of 49 switchgrass (Panicum virgatum) genotypes using physiological and morphological parameters.

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes

Bovine Genome Database: integrated tools for genome annotation and discovery

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

Chromosome-scale genome assemblies and annotations for Poales species <i>Carex cristatella</i>, <i>Carex scoparia</i>, <i>Juncus effusus</i>, and <i>Juncus inflexus</i>

Community annotation: procedures, protocols, and supporting tools.

Comparative genomics of Spiraeoideae-infecting Erwinia amylovora strains revealed high genetic diversity and identified the genetic basis of a low virulence strain.

Computational and transcriptional evidence for microRNAs in the honey bee genome

Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779

Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis.

Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera

Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis

Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis

Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

Fine mapping of the stem rust resistance gene SrTA10187.

Gene coexpression network analysis as a source of functional annotation for rice genes

Genetic Regulation of Development in Sorghum bicolor: VII. ma(3) Flowering Mutant Lacks a Phytochrome that Predominates in Green Tissue.

Genome Sequencing and Transcriptome Analysis of the Hop Downy Mildew Pathogen Pseudoperonospora humuli Reveal Species-Specific Genes for Molecular Detection

Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779

Genome-guided investigation of plant natural product biosynthesis

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

Genomic and genetic database resources for the grasses.

Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

Identification and characterization of lineage-specific genes within the Poaceae

Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Integrated karyotyping of sorghum by in situ hybridization of landed BACs.

Isoprene Acts as a Signaling Molecule in Gene Networks Important for Stress Responses and Plant Growth

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations

Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

Origin and evolution of the octoploid strawberry genome

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species ⬇️

The Microalga Nannochloropsis during Transition from Quiescence to Autotrophy in Response to Nitrogen Availability

The TIGR Plant Transcript Assemblies database

The TIGR Rice Genome Annotation Resource: improvements and new features

The bowfin genome illuminates the developmental evolution of ray-finned fishes

The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.

Transcriptional Regulation of the Glucose-6-Phosphate/Phosphate Translocator 2 Is Related to Carbon Exchange Across the Chloroplast Envelope

Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in