List of works - Guillaume Lobet

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

scientific article (publication date: September 2011)

FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana

scientific article (publication date: 4 January 2016)

An online database for plant image analysis software tools

scientific article (publication date: 9 October 2013)

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

scientific article (publication date: 19 August 2015)

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils

scientific article (publication date: May 2010)

Root System Markup Language: Toward a Unified Root Architecture Description Language

scientific article (publication date: March 2015)

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

scientific article (publication date: 4 January 2013)

Environmental Control of Root System Biology

scientific article (publication date: 29 April 2016)

Image Analysis in Plant Sciences: Publish Then Perish

scientific article

Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere

scientific article

“Rhizoponics”: a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants

scientific article (publication date: 2015)

Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana

scientific article (publication date: 29 June 2016)

CRootBox: a structural-functional modelling framework for root systems

scientific article published on 8 February 2018

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems

scientific article published on 8 January 2018

An evaluation of inexpensive methods for root image acquisition when using rhizotrons.

scientific article

Inflorescence development in tomato: gene functions within a zigzag model

scientific article (publication date: 2014)

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

scientific article published on October 2017

Going with the flow: multiscale insights into the composite nature of water transport in roots

scientific article published on 26 October 2018

Connecting the dots between computational tools to analyse soil-root water relations

scientific article published on 01 April 2019

A New Phenotyping Pipeline Reveals Three Types of Lateral Roots and a Random Branching Pattern in Two Cereals

scientific article published on 11 May 2018

Demystifying roots: A need for clarification and extended concepts in root phenotyping

scientific article published on 25 September 2018

GRANAR, a Computational Tool to Better Understand the Functional Importance of Monocotyledon Root Anatomy

scientific article published on 19 November 2019

Impact of crop residue management on crop production and soil chemistry after seven years of crop rotation in temperate climate, loamy soils.

scientific article

Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture

scientific article published on 12 June 2018

QuoVidi: An open‐source web application for the organization of large‐scale biological treasure hunts

scientific article published in 2020

Root hydraulic properties: an exploration of their variability across scales

scientific article published on 6 December 2023

Root anatomical gradients and cultivar differences underlie variation in root hydraulic properties in German winter wheat

Development and Validation of a Deep Learning Based Automated Minirhizotron Image Analysis Pipeline

Biomass partitioning and canopy architecture of six German winter wheat cultivars released between 1895 and 2002

Root system architecture reorganization under decreasing soil phosphorus lowers root system conductance of Zea mays

Decreased root hydraulic traits in German winter wheat cultivars over 100 years of breeding

Root hydraulic properties: An exploration of their variability across scales

Development and calibration of the FSPM CPlantBox to represent the interactions between water and carbon fluxes in the soil-plant-atmosphere continuum

Lateral Roots: Random Diversity in Adversity

scientific article published on 15 July 2019

Using a structural root system model to evaluate and improve the accuracy of root image analysis pipelines

scholarly article published 14 September 2016

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies

scholarly article published 20 June 2017

List of works by Guillaume Lobet

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana

An online database for plant image analysis software tools

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils

Root System Markup Language: Toward a Unified Root Architecture Description Language

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

Environmental Control of Root System Biology

Image Analysis in Plant Sciences: Publish Then Perish

Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere

“Rhizoponics”: a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants

Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana

CRootBox: a structural-functional modelling framework for root systems

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems

An evaluation of inexpensive methods for root image acquisition when using rhizotrons.

Inflorescence development in tomato: gene functions within a zigzag model

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

Going with the flow: multiscale insights into the composite nature of water transport in roots

Connecting the dots between computational tools to analyse soil-root water relations

A New Phenotyping Pipeline Reveals Three Types of Lateral Roots and a Random Branching Pattern in Two Cereals

Demystifying roots: A need for clarification and extended concepts in root phenotyping

GRANAR, a Computational Tool to Better Understand the Functional Importance of Monocotyledon Root Anatomy

Impact of crop residue management on crop production and soil chemistry after seven years of crop rotation in temperate climate, loamy soils.

Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture

QuoVidi: An open‐source web application for the organization of large‐scale biological treasure hunts

Root hydraulic properties: an exploration of their variability across scales

Root anatomical gradients and cultivar differences underlie variation in root hydraulic properties in German winter wheat

Development and Validation of a Deep Learning Based Automated Minirhizotron Image Analysis Pipeline

Biomass partitioning and canopy architecture of six German winter wheat cultivars released between 1895 and 2002

Root system architecture reorganization under decreasing soil phosphorus lowers root system conductance of Zea mays

Decreased root hydraulic traits in German winter wheat cultivars over 100 years of breeding

Root hydraulic properties: An exploration of their variability across scales

Development and calibration of the FSPM CPlantBox to represent the interactions between water and carbon fluxes in the soil-plant-atmosphere continuum

Lateral Roots: Random Diversity in Adversity

Using a structural root system model to evaluate and improve the accuracy of root image analysis pipelines

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies

Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments

CPlantBox, a whole plant modelling framework for the simulation of water and carbon related processes