List of works by Agnes Noy

Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis

scientific article published on January 2016

Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides

scientific article published on 16 February 2021

Comparison of molecular contours for measuring writhe in atomistic supercoiled DNA.

scientific article published on June 2015

Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity

scientific article published on 01 September 2021

Interference between Triplex and Protein Binding to Distal Sites on Supercoiled DNA. ⬇️

scientific article published on 17 January 2017

Length Scale Dependence of DNA Mechanical Properties

scientific article published in Physical Review Letters

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation ⬇️

scientific article published on 22 September 2016

Noy and Golestanian reply:.

scientific article

Parmbsc1: a refined force field for DNA simulations ⬇️

scientific article

Protein/DNA interactions in complex DNA topologies: expect the unexpected ⬇️

scientific article

Recent advances in the study of nucleic acid flexibility by molecular dynamics

scientific article published on 04 March 2008

Relative Flexibility of DNA and RNA: a Molecular Dynamics Study

scientific article published in October 2004

Small DNA circles as probes of DNA topology

scientific article published on April 2013

Structure, Recognition Properties, and Flexibility of the DNA·RNA Hybrid

scientific article published in April 2005

The chirality of DNA: elasticity cross-terms at base-pair level including A-tracts and the influence of ionic strength

scientific article published in June 2010

The impact of monovalent ion force field model in nucleic acids simulations

scientific article published in 2009

The relative flexibility of B-DNA and A-RNA duplexes: database analysis

scientific article published on 23 November 2004

Theoretical Analysis of Antisense Duplexes: Determinants of the RNase H Susceptibility

scientific article published in March 2008

Theoretical methods for the simulation of nucleic acids.

scientific article published on November 2003

Theoretical study of large conformational transitions in DNA: the B<-->A conformational change in water and ethanol/water

scientific article published on 25 April 2007

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