List of works - Andrea Bernini

A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

scientific article

A branched peptide mimotope of the nicotinic receptor binding site is a potent synthetic antidote against the snake neurotoxin alpha-bungarotoxin

scientific article published on 01 August 2002

A structurally driven analysis of thiol reactivity in mammalian albumins.

scientific article published on 23 December 2010

ApreciseKUre: an approach of Precision Medicine in a Rare Disease.

scientific article

Biochemical filtering of a protein-protein docking simulation identifies the structure of a complex between a recombinant antibody fragment and alpha-bungarotoxin

scientific article

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

scientific article

Efficacy and toxicity of the antimicrobial peptide M33 produced with different counter-ions

scientific article published on 8 October 2011

Homogentisic acid induces aggregation and fibrillation of amyloidogenic proteins.

scientific article published on 16 November 2016

Hot spot mapping of protein surfaces with TEMPOL: Bovine pancreatic RNase A as a model system

scientific article published on 23 November 2016

Interdomain tilt angle determines integrin-dependent function of the ninth and tenth FIII domains of human fibronectin.

scientific article

Investigations into the killing activity of an antimicrobial peptide active against extensively antibiotic-resistant K. pneumon iae and P. aeruginosa.

scientific article published on 2 June 2017

MD and NMR studies of alpha-bungarotoxin surface accessibility.

scientific article

Metal ion complexation and folding of linear peptides.

scientific article published in May 2002

Molecular basis of branched peptides resistance to enzyme proteolysis

scientific article published on 01 March 2007

Molecular definition of the interaction between a tumor-specific tetrabranched peptide and LRP6 receptor

scientific article published on 17 June 2020

Molecular modelling of S1 and S2 subunits of SARS coronavirus spike glycoprotein.

scientific article

NMR Studies of Lysozyme Surface Accessibility by Using Different Paramagnetic Relaxation Probes

scientific article published on 01 July 2006

NMR Studies on Structure and Dynamics of the Monomeric Derivative of BS-RNase: New Insights for 3D Domain Swapping

scientific article

NMR and MD studies on the interaction between ligand peptides and alpha-bungarotoxin.

scientific article

NMR structure of alpha-bungarotoxin free and bound to a mimotope of the nicotinic acetylcholine receptor

scientific article

NMR studies of BPTI aggregation by using paramagnetic relaxation reagents

scientific article published on 03 April 2006

NMR studies of protein hydration and TEMPOL accessibility.

scientific article

NMR studies of protein surface accessibility.

scientific article

NMR studies of the inclusion complex between beta-cyclodextrin and paroxetine.

scientific article

NMR studies on Ni(II) induced cyclization of a histidine-tagged peptide.

scientific article

Near-infrared quantum dots labelled with a tumor selective tetrabranched peptide for in vivo imaging.

scientific article published on 3 March 2018

On the dynamics of water molecules at the protein solute interfaces.

scientific article

On the mechanisms of bananin activity against severe acute respiratory syndrome coronavirus.

scientific article

Prediction of quaternary assembly of SARS coronavirus peplomer

scientific article published in December 2004

ProCoCoA: A quantitative approach for analyzing protein core composition.

scientific article published on 31 December 2012

Probing the protein space for extending the detection of weak homology folds

scientific article (publication date: March 2013)

Probing the surface of a sweet protein: NMR study of MNEI with a paramagnetic probe

scientific article

Protein-thiol substitution or protein dethiolation by thiol/disulfide exchange reactions: the albumin model

scientific article published on 01 November 2007

Searching for protein binding sites from Molecular Dynamics simulations and paramagnetic fragment-based NMR studies

scientific article published on 27 December 2013

Stable peptide inhibitors prevent binding of lethal and oedema factors to protective antigen and neutralize anthrax toxin in vivo

scientific article

Structure and function correlations between the rat liver threonine deaminase and aminotransferases.

scientific article published on January 2003

Tendamistat surface accessibility to the TEMPOL paramagnetic probe.

scientific article

The use of a ditopic Gd(III) paramagnetic probe for investigating α-bungarotoxin surface accessibility.

scientific article

Three-dimensional computation of atom depth in complex molecular structures.

scientific article

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1,2-dioxygenase mutants at the base of rare disease Alkaptonuria

scientific article published on 25 August 2017

List of works by Andrea Bernini

A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

A branched peptide mimotope of the nicotinic receptor binding site is a potent synthetic antidote against the snake neurotoxin alpha-bungarotoxin

A structurally driven analysis of thiol reactivity in mammalian albumins.

ApreciseKUre: an approach of Precision Medicine in a Rare Disease.

Biochemical filtering of a protein-protein docking simulation identifies the structure of a complex between a recombinant antibody fragment and alpha-bungarotoxin

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

Efficacy and toxicity of the antimicrobial peptide M33 produced with different counter-ions

Homogentisic acid induces aggregation and fibrillation of amyloidogenic proteins.

Hot spot mapping of protein surfaces with TEMPOL: Bovine pancreatic RNase A as a model system

Interdomain tilt angle determines integrin-dependent function of the ninth and tenth FIII domains of human fibronectin.

Investigations into the killing activity of an antimicrobial peptide active against extensively antibiotic-resistant K. pneumon iae and P. aeruginosa.

MD and NMR studies of alpha-bungarotoxin surface accessibility.

Metal ion complexation and folding of linear peptides.

Molecular basis of branched peptides resistance to enzyme proteolysis

Molecular definition of the interaction between a tumor-specific tetrabranched peptide and LRP6 receptor

Molecular modelling of S1 and S2 subunits of SARS coronavirus spike glycoprotein.

NMR Studies of Lysozyme Surface Accessibility by Using Different Paramagnetic Relaxation Probes

NMR Studies on Structure and Dynamics of the Monomeric Derivative of BS-RNase: New Insights for 3D Domain Swapping

NMR and MD studies on the interaction between ligand peptides and alpha-bungarotoxin.

NMR structure of alpha-bungarotoxin free and bound to a mimotope of the nicotinic acetylcholine receptor

NMR studies of BPTI aggregation by using paramagnetic relaxation reagents

NMR studies of protein hydration and TEMPOL accessibility.

NMR studies of protein surface accessibility.

NMR studies of the inclusion complex between beta-cyclodextrin and paroxetine.

NMR studies on Ni(II) induced cyclization of a histidine-tagged peptide.

Near-infrared quantum dots labelled with a tumor selective tetrabranched peptide for in vivo imaging.

On the dynamics of water molecules at the protein solute interfaces.

On the mechanisms of bananin activity against severe acute respiratory syndrome coronavirus.

Prediction of quaternary assembly of SARS coronavirus peplomer

ProCoCoA: A quantitative approach for analyzing protein core composition.

Probing the protein space for extending the detection of weak homology folds

Probing the surface of a sweet protein: NMR study of MNEI with a paramagnetic probe

Protein-thiol substitution or protein dethiolation by thiol/disulfide exchange reactions: the albumin model

Searching for protein binding sites from Molecular Dynamics simulations and paramagnetic fragment-based NMR studies

Stable peptide inhibitors prevent binding of lethal and oedema factors to protective antigen and neutralize anthrax toxin in vivo

Structure and function correlations between the rat liver threonine deaminase and aminotransferases.

Tendamistat surface accessibility to the TEMPOL paramagnetic probe.

The use of a ditopic Gd(III) paramagnetic probe for investigating α-bungarotoxin surface accessibility.

Three-dimensional computation of atom depth in complex molecular structures.

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1,2-dioxygenase mutants at the base of rare disease Alkaptonuria